Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6126_RS05000 Genome accession   NZ_CP082087
Coordinates   1038698..1039327 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MS20649     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033698..1044327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6126_RS04980 (K6126_04915) ycbZ 1034087..1035847 (-) 1761 WP_000156526.1 Lon protease family protein -
  K6126_RS04985 (K6126_04920) matP 1036033..1036485 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  K6126_RS04990 (K6126_04925) ompA 1036561..1037613 (-) 1053 WP_001361736.1 porin OmpA -
  K6126_RS04995 (K6126_04930) sulA 1037970..1038479 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  K6126_RS05000 (K6126_04935) sxy/tfoX 1038698..1039327 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K6126_RS05005 (K6126_04940) yccS 1039290..1041452 (-) 2163 WP_000875019.1 YccS family putative transporter -
  K6126_RS05010 (K6126_04945) yccF 1041462..1041908 (-) 447 WP_001261235.1 YccF domain-containing protein -
  K6126_RS05015 (K6126_04950) helD 1042031..1044085 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=599211 K6126_RS05000 WP_000839153.1 1038698..1039327(+) (sxy/tfoX) [Escherichia coli strain MS20649]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=599211 K6126_RS05000 WP_000839153.1 1038698..1039327(+) (sxy/tfoX) [Escherichia coli strain MS20649]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1