Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   NCL52_RS09195 Genome accession   NZ_CP098417
Coordinates   1774621..1775052 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain N2-10     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1769621..1780052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS09175 (NCL52_09175) spoVS 1770183..1770443 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  NCL52_RS09180 (NCL52_09180) tdh 1770708..1771751 (+) 1044 WP_033883737.1 L-threonine 3-dehydrogenase -
  NCL52_RS09185 (NCL52_09185) kbl 1771764..1772942 (+) 1179 WP_041336018.1 glycine C-acetyltransferase -
  NCL52_RS09190 (NCL52_09190) miaB 1773090..1774619 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  NCL52_RS09195 (NCL52_09195) ymcA 1774621..1775052 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  NCL52_RS09200 (NCL52_09200) cotE 1775306..1775851 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  NCL52_RS09205 (NCL52_09205) hexA 1775984..1778560 (+) 2577 WP_124073226.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=599206 NCL52_RS09195 WP_003231834.1 1774621..1775052(+) (ymcA) [Bacillus subtilis strain N2-10]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=599206 NCL52_RS09195 WP_003231834.1 1774621..1775052(+) (ymcA) [Bacillus subtilis strain N2-10]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1