Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6127_RS04540 Genome accession   NZ_CP082085
Coordinates   970162..970791 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain MS20653     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 965162..975791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6127_RS04520 (K6127_04500) ycbZ 965562..967322 (-) 1761 WP_000156501.1 Lon protease family protein -
  K6127_RS04525 (K6127_04505) matP 967508..967960 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K6127_RS04530 (K6127_04510) ompA 968038..969078 (-) 1041 WP_001350588.1 porin OmpA -
  K6127_RS04535 (K6127_04515) sulA 969434..969943 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  K6127_RS04540 (K6127_04520) sxy/tfoX 970162..970791 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K6127_RS04545 (K6127_04525) yccS 970754..972916 (-) 2163 WP_000875041.1 YccS family putative transporter -
  K6127_RS04550 (K6127_04530) yccF 972926..973372 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K6127_RS04555 (K6127_04535) helD 973495..975549 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=599189 K6127_RS04540 WP_000839136.1 970162..970791(+) (sxy/tfoX) [Escherichia coli strain MS20653]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=599189 K6127_RS04540 WP_000839136.1 970162..970791(+) (sxy/tfoX) [Escherichia coli strain MS20653]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99