Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NCL52_RS06810 Genome accession   NZ_CP098417
Coordinates   1314995..1316131 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1309995..1321131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS06790 (NCL52_06790) uxaA 1310444..1311937 (+) 1494 WP_086343734.1 altronate dehydratase family protein -
  NCL52_RS06795 (NCL52_06795) yjnA 1311976..1312740 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  NCL52_RS06800 (NCL52_06800) bstD 1312965..1313429 (-) 465 WP_014479541.1 DinB family protein -
  NCL52_RS06805 (NCL52_06805) yjoB 1313578..1314849 (+) 1272 WP_003245490.1 ATPase YjoB -
  NCL52_RS06810 (NCL52_06810) rapC 1314995..1316131 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  NCL52_RS06815 (NCL52_06815) phrA 1316121..1316255 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  NCL52_RS06820 (NCL52_06820) yjpA 1316285..1316542 (-) 258 WP_024572656.1 YciI family protein -
  NCL52_RS06825 (NCL52_06825) xlyB 1316663..1317616 (+) 954 WP_134982734.1 N-acetylmuramoyl-L-alanine amidase -
  NCL52_RS06830 (NCL52_06830) yjqA 1317656..1318033 (-) 378 WP_014476529.1 PH domain-containing protein -
  NCL52_RS06835 (NCL52_06835) pghB 1318138..1318740 (+) 603 WP_137200727.1 poly-gamma-glutamate hydrolase family protein -
  NCL52_RS06840 (NCL52_06840) xpdC 1318813..1319649 (+) 837 WP_003245071.1 manganese catalase family protein -
  NCL52_RS06845 (NCL52_06845) xkdA 1319693..1320289 (-) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  NCL52_RS06850 (NCL52_06850) xre 1320452..1320793 (-) 342 WP_134982740.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=599185 NCL52_RS06810 WP_015252291.1 1314995..1316131(+) (rapC) [Bacillus subtilis strain N2-10]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=599185 NCL52_RS06810 WP_015252291.1 1314995..1316131(+) (rapC) [Bacillus subtilis strain N2-10]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAAATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418