Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6133_RS04935 Genome accession   NZ_CP082083
Coordinates   1029295..1029924 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain MS20654     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1024295..1034924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6133_RS04915 (K6133_04885) ycbZ 1024695..1026455 (-) 1761 WP_000156501.1 Lon protease family protein -
  K6133_RS04920 (K6133_04890) matP 1026641..1027093 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K6133_RS04925 (K6133_04895) ompA 1027171..1028211 (-) 1041 WP_001350588.1 porin OmpA -
  K6133_RS04930 (K6133_04900) sulA 1028567..1029076 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  K6133_RS04935 (K6133_04905) sxy/tfoX 1029295..1029924 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K6133_RS04940 (K6133_04910) yccS 1029887..1032049 (-) 2163 WP_000875041.1 YccS family putative transporter -
  K6133_RS04945 (K6133_04915) yccF 1032059..1032505 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K6133_RS04950 (K6133_04920) helD 1032628..1034682 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=599167 K6133_RS04935 WP_000839136.1 1029295..1029924(+) (sxy/tfoX) [Escherichia coli strain MS20654]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=599167 K6133_RS04935 WP_000839136.1 1029295..1029924(+) (sxy/tfoX) [Escherichia coli strain MS20654]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99