Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   NCL52_RS05490 Genome accession   NZ_CP098417
Coordinates   1065155..1068046 (+) Length   963 a.a.
NCBI ID   WP_137200680.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1060155..1073046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS05465 (NCL52_05465) yhaR 1060569..1061336 (+) 768 WP_124059656.1 enoyl-CoA hydratase -
  NCL52_RS05470 (NCL52_05470) yhzD 1061357..1061542 (-) 186 WP_015715596.1 YhzD family protein -
  NCL52_RS05475 (NCL52_05475) yhaQ 1061669..1062565 (+) 897 WP_251107065.1 ABC transporter ATP-binding protein -
  NCL52_RS05480 (NCL52_05480) yhaP 1062558..1063817 (+) 1260 WP_003244912.1 ABC transporter permease -
  NCL52_RS05485 (NCL52_05485) yhaO 1063924..1065150 (+) 1227 WP_124059660.1 exonuclease SbcCD subunit D -
  NCL52_RS05490 (NCL52_05490) sbcE 1065155..1068046 (+) 2892 WP_137200680.1 DNA repair/recombination ATPase SbcE Machinery gene
  NCL52_RS05495 (NCL52_05495) yhaM 1068120..1069064 (+) 945 WP_041052771.1 3'-5' exoribonuclease YhaM -
  NCL52_RS05500 (NCL52_05500) yhaL 1069189..1069401 (+) 213 WP_003233252.1 sporulation protein YhaL -
  NCL52_RS05505 (NCL52_05505) prsA 1069442..1070320 (-) 879 WP_024571668.1 peptidylprolyl isomerase PrsA -
  NCL52_RS05510 (NCL52_05510) yhzE1 1070480..1070566 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  NCL52_RS05515 (NCL52_05515) yhzE2 1070690..1070776 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  NCL52_RS05520 (NCL52_05520) - 1070829..1071011 (-) 183 WP_024571667.1 hypothetical protein -
  NCL52_RS05525 (NCL52_05525) yhaJ 1071119..1071637 (-) 519 WP_024571666.1 DUF3267 domain-containing protein -
  NCL52_RS05530 (NCL52_05530) yhaI 1071845..1072186 (+) 342 WP_009966921.1 YhaI family protein -
  NCL52_RS05535 (NCL52_05535) scoC 1072183..1072794 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111106.24 Da        Isoelectric Point: 6.4951

>NTDB_id=599166 NCL52_RS05490 WP_137200680.1 1065155..1068046(+) (sbcE) [Bacillus subtilis strain N2-10]
MTALRIISLHIYQYGKFSNRTFHFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLGEKRTLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLVQVIAEFPEHAGQFPTDGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDAEKAVHAASSAILENSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKPSFRNSRETRQPMTDISPAEAEMLRGALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLRPVNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGGHPEELELADSNTLSELKDKQFVENERKERLTEEIERLRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIRNKLERHKKVELPRLLETAGEFFRPLTDGSYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQDGSMLPFQLDDSFVHFDQERLKRVLHVLYDLSKGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=599166 NCL52_RS05490 WP_137200680.1 1065155..1068046(+) (sbcE) [Bacillus subtilis strain N2-10]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATATGGAAAATTTTCCAATCGGACCTTTCACTTTTCCGCCTC
TCCTGTCCAAGTAATTTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTTATTGAAAGTATGCTGTTCGGTT
TTCCAAAAACAAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAATATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTTGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGATAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAACTGGA
AACGCTTAAGCAGCTGGCAGTGAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGGGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAACCATTGCTAAATGAAAAAGCGACACTCGTACAGGTGATTGCAGAATTTCCAGAACATGCAGGACAATT
TCCTACTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCAGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTTAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGCGGAAAAGGCCGTTCATGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAACCGTCTTTTCG
AAACAGCCGAGAGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGGAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAAGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCGTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATCG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGACACCCGGAGGAACTTGAACTGGCAGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCGGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCCTCGGGATTGGTCTCAGATCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTAAAAGAAACGGCTAAAAAATGGGCCTCCATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAGGTTGAGCTTCCGCGCCTTCTGGAGACGGCAGGAGAATTCTTCCGCCCCCTGACTGACGGAAGCT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACATGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACGCGCCAGGATGGGTCAATGCT
TCCGTTTCAGCTTGATGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CCAAAGGCGGTAGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

98.027

100

0.98