Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   NCL52_RS02445 Genome accession   NZ_CP098417
Coordinates   476213..476647 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain N2-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 471213..481647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS02415 (NCL52_02415) ydaD 471860..472720 (+) 861 WP_042977133.1 SDR family oxidoreductase -
  NCL52_RS02420 (NCL52_02420) lyxE 472736..473239 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  NCL52_RS02425 (NCL52_02425) ydaF 473327..473878 (+) 552 WP_124073405.1 GNAT family protein -
  NCL52_RS02430 (NCL52_02430) ydaG 473956..474378 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  NCL52_RS02435 (NCL52_02435) amj 474884..475693 (+) 810 WP_003234394.1 lipid II flippase Amj -
  NCL52_RS02440 (NCL52_02440) ydzA 475738..476028 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  NCL52_RS02445 (NCL52_02445) lrpC 476213..476647 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  NCL52_RS02450 (NCL52_02450) topB 476712..478895 (+) 2184 WP_086343467.1 DNA topoisomerase III -
  NCL52_RS02455 (NCL52_02455) ephJ 479098..480186 (+) 1089 WP_086343468.1 lipoprotein YdaJ -
  NCL52_RS02460 (NCL52_02460) epsK 480167..481018 (+) 852 WP_086343469.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=599153 NCL52_RS02445 WP_003246585.1 476213..476647(+) (lrpC) [Bacillus subtilis strain N2-10]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=599153 NCL52_RS02445 WP_003246585.1 476213..476647(+) (lrpC) [Bacillus subtilis strain N2-10]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCACCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1