Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6125_RS04745 Genome accession   NZ_CP082077
Coordinates   1002255..1002884 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MS20657     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 997255..1007884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6125_RS04725 (K6125_04710) ycbZ 997645..999405 (-) 1761 WP_001552710.1 Lon protease family protein -
  K6125_RS04730 (K6125_04715) matP 999591..1000043 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K6125_RS04735 (K6125_04720) ompA 1000119..1001171 (-) 1053 WP_001346420.1 porin OmpA -
  K6125_RS04740 (K6125_04725) sulA 1001527..1002036 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  K6125_RS04745 (K6125_04730) sxy/tfoX 1002255..1002884 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K6125_RS04750 (K6125_04735) yccS 1002847..1005009 (-) 2163 WP_122986686.1 YccS family putative transporter -
  K6125_RS04755 (K6125_04740) yccF 1005019..1005465 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K6125_RS04760 (K6125_04745) helD 1005588..1007642 (+) 2055 WP_001552712.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=599122 K6125_RS04745 WP_000839153.1 1002255..1002884(+) (sxy/tfoX) [Escherichia coli strain MS20657]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=599122 K6125_RS04745 WP_000839153.1 1002255..1002884(+) (sxy/tfoX) [Escherichia coli strain MS20657]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1