Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6140_RS05375 Genome accession   NZ_CP082073
Coordinates   1099497..1100126 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MS20659     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094497..1105126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6140_RS05355 (K6140_05305) ycbZ 1094899..1096659 (-) 1761 WP_000156492.1 Lon protease family protein -
  K6140_RS05360 (K6140_05310) matP 1096845..1097297 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  K6140_RS05365 (K6140_05315) ompA 1097373..1098413 (-) 1041 WP_001518466.1 porin OmpA -
  K6140_RS05370 (K6140_05320) sulA 1098769..1099278 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  K6140_RS05375 (K6140_05325) sxy/tfoX 1099497..1100126 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K6140_RS05380 (K6140_05330) yccS 1100089..1102251 (-) 2163 WP_000875008.1 YccS family putative transporter -
  K6140_RS05385 (K6140_05335) yccF 1102261..1102707 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K6140_RS05390 (K6140_05340) helD 1102830..1104884 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=599077 K6140_RS05375 WP_000839153.1 1099497..1100126(+) (sxy/tfoX) [Escherichia coli strain MS20659]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=599077 K6140_RS05375 WP_000839153.1 1099497..1100126(+) (sxy/tfoX) [Escherichia coli strain MS20659]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1