Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6164_RS17610 Genome accession   NZ_CP082029
Coordinates   3587823..3588419 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP18-2113     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3582823..3593419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6164_RS17595 helD 3583031..3585085 (-) 2055 WP_020324408.1 DNA helicase IV -
  K6164_RS17600 - 3585210..3585656 (+) 447 WP_002898425.1 YccF domain-containing protein -
  K6164_RS17605 yccS 3585674..3587809 (+) 2136 WP_004147856.1 YccS family putative transporter -
  K6164_RS17610 sxy/tfoX 3587823..3588419 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  K6164_RS17615 sulA 3588768..3589277 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  K6164_RS17620 ompA 3589630..3590700 (+) 1071 WP_002898408.1 porin OmpA -
  K6164_RS17625 matP 3590832..3591284 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  K6164_RS17630 - 3591470..3593227 (+) 1758 WP_020324406.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=598856 K6164_RS17610 WP_004179217.1 3587823..3588419(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP18-2113]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=598856 K6164_RS17610 WP_004179217.1 3587823..3588419(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP18-2113]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51