Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KFZ60_RS23275 Genome accession   NZ_CP098231
Coordinates   4813829..4814821 (-) Length   330 a.a.
NCBI ID   WP_000224466.1    Uniprot ID   -
Organism   Escherichia coli strain XJ34     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4808829..4819821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ60_RS23265 (KFZ60_23180) yieP 4811721..4812413 (+) 693 WP_001131179.1 FadR/GntR family transcriptional regulator -
  KFZ60_RS23270 (KFZ60_23185) mdtD 4812436..4813863 (+) 1428 WP_001280850.1 multidrug transporter subunit MdtD -
  KFZ60_RS23275 (KFZ60_23190) cytR 4813829..4814821 (-) 993 WP_000224466.1 ribose operon transcriptional repressor RbsR Regulator
  KFZ60_RS23280 (KFZ60_23195) rbsK 4814825..4815754 (-) 930 WP_032281895.1 ribokinase -
  KFZ60_RS23285 (KFZ60_23200) rbsB 4815890..4816780 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  KFZ60_RS23290 (KFZ60_23205) rbsC 4816805..4817770 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  KFZ60_RS23295 (KFZ60_23210) rbsA 4817775..4819280 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  KFZ60_RS23300 (KFZ60_23215) rbsD 4819288..4819707 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36623.96 Da        Isoelectric Point: 5.2141

>NTDB_id=598779 KFZ60_RS23275 WP_000224466.1 4813829..4814821(-) (cytR) [Escherichia coli strain XJ34]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRIIQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=598779 KFZ60_RS23275 WP_000224466.1 4813829..4814821(-) (cytR) [Escherichia coli strain XJ34]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACTAATCCTTTCTATTCAGAACTGGTGCGCGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAGCGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCAAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAATCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364