Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   KFZ60_RS17085 Genome accession   NZ_CP098231
Coordinates   3533433..3534038 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain XJ34     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3528433..3539038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ60_RS17065 (KFZ60_17015) aes 3528574..3529533 (+) 960 WP_088375876.1 acetyl esterase -
  KFZ60_RS17070 (KFZ60_17020) hemH 3529530..3530492 (-) 963 WP_001250105.1 ferrochelatase -
  KFZ60_RS17075 (KFZ60_17025) adk 3530624..3531268 (-) 645 WP_001220233.1 adenylate kinase -
  KFZ60_RS17080 (KFZ60_17030) htpG 3531449..3533323 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  KFZ60_RS17085 (KFZ60_17035) recR 3533433..3534038 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  KFZ60_RS17090 (KFZ60_17040) ybaB 3534038..3534367 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  KFZ60_RS17095 (KFZ60_17045) dnaX 3534420..3536351 (-) 1932 WP_032280410.1 DNA polymerase III subunit gamma/tau -
  KFZ60_RS17100 (KFZ60_17050) apt 3536480..3537031 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  KFZ60_RS17105 (KFZ60_17055) ybaN 3537184..3537561 (-) 378 WP_001188905.1 DUF454 family protein -
  KFZ60_RS17110 (KFZ60_17060) priC 3537631..3538158 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  KFZ60_RS17115 (KFZ60_17065) rsmS 3538172..3538333 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  KFZ60_RS17120 - 3538386..3538484 (-) 99 Protein_3355 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=598755 KFZ60_RS17085 WP_001195025.1 3533433..3534038(-) (recR) [Escherichia coli strain XJ34]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=598755 KFZ60_RS17085 WP_001195025.1 3533433..3534038(-) (recR) [Escherichia coli strain XJ34]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACTGAACAGGAAGTCTGTAACATCTGTTCAAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443