Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFZ60_RS08865 Genome accession   NZ_CP098231
Coordinates   1858957..1860384 (-) Length   475 a.a.
NCBI ID   WP_088376091.1    Uniprot ID   -
Organism   Escherichia coli strain XJ34     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1853957..1865384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ60_RS08835 (KFZ60_08810) yeeZ 1854012..1854836 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KFZ60_RS08840 (KFZ60_08815) yeeY 1854882..1855811 (+) 930 Protein_1730 LysR substrate-binding domain-containing protein -
  KFZ60_RS08845 (KFZ60_08820) yoeI 1856026..1856088 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFZ60_RS08850 (KFZ60_08825) plaP 1856078..1857436 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFZ60_RS08855 (KFZ60_08830) tsuA 1857615..1858673 (+) 1059 WP_088376090.1 thiosulfate utilization transporter TsuA/YeeE -
  KFZ60_RS08860 (KFZ60_08835) tsuB 1858687..1858914 (+) 228 WP_000985277.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFZ60_RS08865 (KFZ60_08840) sbcB 1858957..1860384 (-) 1428 WP_088376091.1 exodeoxyribonuclease I Machinery gene
  KFZ60_RS08870 (KFZ60_08845) dacD 1860593..1861759 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFZ60_RS08875 (KFZ60_08850) sbmC 1861878..1862351 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  KFZ60_RS08880 (KFZ60_08855) yeeA 1862550..1863608 (+) 1059 WP_001200891.1 FUSC family protein -
  KFZ60_RS08885 (KFZ60_08860) tmaR 1863780..1864109 (+) 330 WP_000450409.1 DUF496 family protein -
  KFZ60_RS08890 (KFZ60_08865) - 1864210..1864401 (-) 192 Protein_1740 EutP/PduV family microcompartment system protein -
  KFZ60_RS08895 (KFZ60_08870) cobU 1864568..1865113 (+) 546 WP_088376092.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4720

>NTDB_id=598737 KFZ60_RS08865 WP_088376091.1 1858957..1860384(-) (sbcB) [Escherichia coli strain XJ34]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=598737 KFZ60_RS08865 WP_088376091.1 1858957..1860384(-) (sbcB) [Escherichia coli strain XJ34]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACATTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577