Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K5H97_RS08215 Genome accession   NZ_CP081966
Coordinates   1806831..1807466 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas mosselii strain DSM 17497     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1801831..1812466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5H97_RS08195 (K5H97_08195) - 1802079..1803011 (+) 933 WP_028690973.1 ABC transporter ATP-binding protein -
  K5H97_RS08200 (K5H97_08200) - 1803008..1803787 (+) 780 WP_028690974.1 ABC transporter permease -
  K5H97_RS08205 (K5H97_08205) - 1803671..1804312 (-) 642 WP_139121109.1 DUF2062 domain-containing protein -
  K5H97_RS08210 (K5H97_08210) comA 1804457..1806670 (+) 2214 WP_028690975.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5H97_RS08215 (K5H97_08215) exbB 1806831..1807466 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5H97_RS08220 (K5H97_08220) - 1807463..1807897 (+) 435 WP_028690977.1 biopolymer transporter ExbD -
  K5H97_RS08225 (K5H97_08225) lpxK 1807897..1808901 (+) 1005 WP_028690978.1 tetraacyldisaccharide 4'-kinase -
  K5H97_RS08230 (K5H97_08230) - 1808936..1809121 (+) 186 WP_011532874.1 Trm112 family protein -
  K5H97_RS08235 (K5H97_08235) kdsB 1809118..1809882 (+) 765 WP_028690979.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5H97_RS08240 (K5H97_08240) - 1809882..1810346 (+) 465 WP_028690980.1 low molecular weight protein-tyrosine-phosphatase -
  K5H97_RS08245 (K5H97_08245) murB 1810343..1811362 (+) 1020 WP_028690981.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=598674 K5H97_RS08215 WP_028690976.1 1806831..1807466(+) (exbB) [Pseudomonas mosselii strain DSM 17497]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=598674 K5H97_RS08215 WP_028690976.1 1806831..1807466(+) (exbB) [Pseudomonas mosselii strain DSM 17497]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCGATCGCCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCTATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTCCTGGCCGGGGGGATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829