Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFZ54_RS14355 Genome accession   NZ_CP098227
Coordinates   2952890..2953519 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain XJ6-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2947890..2958519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ54_RS14340 (KFZ54_14300) helD 2948132..2950186 (-) 2055 WP_000420536.1 DNA helicase IV -
  KFZ54_RS14345 (KFZ54_14305) yccF 2950309..2950755 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFZ54_RS14350 (KFZ54_14310) yccS 2950765..2952927 (+) 2163 WP_000323868.1 YccS family putative transporter -
  KFZ54_RS14355 (KFZ54_14315) sxy/tfoX 2952890..2953519 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFZ54_RS14360 (KFZ54_14320) sulA 2953737..2954246 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KFZ54_RS14365 (KFZ54_14325) ompA 2954603..2955655 (+) 1053 WP_032223517.1 porin OmpA -
  KFZ54_RS14370 (KFZ54_14330) matP 2955731..2956183 (-) 453 WP_097755918.1 macrodomain Ter protein MatP -
  KFZ54_RS14375 (KFZ54_14335) ycbZ 2956369..2958129 (+) 1761 WP_088375610.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=598591 KFZ54_RS14355 WP_000839153.1 2952890..2953519(-) (sxy/tfoX) [Escherichia coli strain XJ6-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=598591 KFZ54_RS14355 WP_000839153.1 2952890..2953519(-) (sxy/tfoX) [Escherichia coli strain XJ6-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTTCGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTCGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1