Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K5R88_RS16845 Genome accession   NZ_CP081943
Coordinates   3711319..3712686 (-) Length   455 a.a.
NCBI ID   WP_223557260.1    Uniprot ID   -
Organism   Pseudomonas sp. MM213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3706319..3717686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5R88_RS16820 (K5R88_16715) - 3706462..3707151 (+) 690 WP_226298074.1 GntR family transcriptional regulator -
  K5R88_RS16825 (K5R88_16720) yjiA 3707247..3708218 (-) 972 WP_008028882.1 GTPase -
  K5R88_RS16830 (K5R88_16725) - 3708381..3708578 (-) 198 WP_007895266.1 YbdD/YjiX family protein -
  K5R88_RS16835 (K5R88_16730) - 3708593..3710659 (-) 2067 WP_008040323.1 carbon starvation CstA family protein -
  K5R88_RS16840 (K5R88_16735) - 3710818..3711186 (+) 369 WP_008040322.1 PilZ domain-containing protein -
  K5R88_RS16845 (K5R88_16740) radA 3711319..3712686 (-) 1368 WP_223557260.1 DNA repair protein RadA Machinery gene
  K5R88_RS16850 (K5R88_16745) mscL 3713344..3713760 (+) 417 WP_008040320.1 large-conductance mechanosensitive channel protein MscL -
  K5R88_RS16855 (K5R88_16750) - 3713803..3714579 (-) 777 WP_226298075.1 ferredoxin--NADP reductase -
  K5R88_RS16860 (K5R88_16755) - 3714916..3715647 (+) 732 WP_226298076.1 autoinducer binding domain-containing protein -
  K5R88_RS16865 (K5R88_16760) - 3715798..3716922 (+) 1125 WP_192228015.1 methyltransferase -
  K5R88_RS16870 (K5R88_16765) - 3717001..3717168 (-) 168 WP_008028899.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48738.16 Da        Isoelectric Point: 6.8987

>NTDB_id=598589 K5R88_RS16845 WP_223557260.1 3711319..3712686(-) (radA) [Pseudomonas sp. MM213]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPSGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=598589 K5R88_RS16845 WP_223557260.1 3711319..3712686(-) (radA) [Pseudomonas sp. MM213]
ATGGCCAAGGCCAAACGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAGTG
CGGGGCCTGGAACACCTTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCAGCCCCCAGCGGCCGCACCGGCTGGACCG
GCCAACAGGCACAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATACCGCGCTTTTCCACTGCATCCAGTGAGCTC
GATCGCGTCCTGGGTGGCGGGCTGGTGGACGGTTCGGTGGTTTTGATCGGCGGTGATCCGGGCATCGGCAAATCAACCAT
CCTCTTGCAAACCTTGTGCAACCTCGCCAAGAGCATGCCGGCGTTGTACGTCACGGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGACGCCTGGGATTACCGCAGGATCAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATAGCC
ACCGCCCGGGTCGAAAAGCCCAAGGTCATGGTGATCGACTCGATTCAGACGATTTTCACCGAGCAGCTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTGCGGGAGAGCGCGGCCTTGCTGGTGCGTTATGCCAAACAGAGTGGCACAGCCATTTTTCTGG
TTGGCCACGTGACGAAAGAAGGTGCGCTGGCCGGACCGCGCGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGCGAATCCGACGGTCGCTTGCGCTTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACAAGGGTTTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTTACTCGTGCACAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCAACGTGGGAAGGGACCCGACCGATGCTGGTGGAGGTTCAGGCGTTGGTGGATGACAGCCATCTGGCC
AACCCGCGTCGGGTCACGTTGGGGCTGGATCAGAACCGACTGGCGATGTTGCTGGCGGTTCTGCATCGACACGGCGGCAT
TCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGCGTGAAGGTGTTGGAAACCGCATCCGACCTGGCGCTGA
TGGCGGCGGTCATGTCCAGTTTGCGCAACCGGCCATTGCCCCATGATCTGCTGGTGTTCGGCGAAGTCGGTTTGTCTGGC
GAAGTGCGTCCGGTGCCGAGCGGGCAGGAACGCTTGAAAGAAGCGGCCAAGCACGGCTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAGTCTCCGTCGGGATTGCAGATTATTGCCGTTACCCGCCTCGAACAGGCCCTCGACGCCCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464