Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K5Q02_RS07670 Genome accession   NZ_CP081942
Coordinates   1713319..1714683 (+) Length   454 a.a.
NCBI ID   WP_225837988.1    Uniprot ID   -
Organism   Pseudomonas sp. MM211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1708319..1719683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Q02_RS07645 (K5Q02_07620) - 1708801..1709574 (+) 774 WP_225837978.1 ferredoxin--NADP reductase -
  K5Q02_RS07650 (K5Q02_07625) - 1710001..1711566 (+) 1566 WP_225837980.1 TerC family protein -
  K5Q02_RS07655 (K5Q02_07630) mscL 1711629..1712042 (-) 414 WP_225837982.1 large-conductance mechanosensitive channel protein MscL -
  K5Q02_RS07660 (K5Q02_07635) - 1712330..1712602 (+) 273 WP_225837984.1 DUF465 domain-containing protein -
  K5Q02_RS07665 (K5Q02_07640) - 1712698..1713183 (-) 486 WP_225837986.1 GNAT family N-acetyltransferase -
  K5Q02_RS07670 (K5Q02_07645) radA 1713319..1714683 (+) 1365 WP_225837988.1 DNA repair protein RadA Machinery gene
  K5Q02_RS07675 (K5Q02_07650) - 1714712..1714858 (-) 147 WP_225837989.1 hypothetical protein -
  K5Q02_RS07680 (K5Q02_07655) - 1714986..1715354 (-) 369 WP_225837990.1 PilZ domain-containing protein -
  K5Q02_RS07685 (K5Q02_07660) - 1715496..1716122 (-) 627 WP_225837991.1 response regulator transcription factor -
  K5Q02_RS07690 (K5Q02_07665) - 1716119..1717495 (-) 1377 WP_225837993.1 cache domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48651.20 Da        Isoelectric Point: 7.0800

>NTDB_id=598561 K5Q02_RS07670 WP_225837988.1 1713319..1714683(+) (radA) [Pseudomonas sp. MM211]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLTETMIEAGAATPSGRTGWTGAQAQLKTLAEVSVEEMPRFSTASAELD
RVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNVAQRFPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESIIAT
ARQEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFEG
DPDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDTSHMGN
PRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVISSLRNRPLPHDLLVFGEVGLSGE
IRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVVAVTRLEQALDALFE

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=598561 K5Q02_RS07670 WP_225837988.1 1713319..1714683(+) (radA) [Pseudomonas sp. MM211]
ATGGCCAAGGCCAAACGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGGCAGTGCGGTGAGTG
CGGTGCCTGGAACACGCTGACCGAAACCATGATCGAAGCCGGCGCGGCGACGCCCAGCGGGCGCACGGGGTGGACGGGCG
CGCAGGCGCAGCTCAAGACTCTGGCCGAAGTCAGCGTCGAGGAAATGCCGCGCTTTTCCACCGCTTCGGCAGAGCTCGAC
CGGGTACTCGGTGGCGGCCTGGTGGATGGCTCGGTGGTATTGATTGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCT
GCTACAGACCCTGTGCAATGTGGCCCAGCGTTTCCCGGCGCTTTACGTCACTGGCGAGGAATCCCAGCAACAGGTGGCGA
TGCGTGCCCGGCGCCTCGGCTTGCCCGAGGACAAGCTCAAGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCCACG
GCCCGCCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGCTGCAGTCGGCCCCCGG
CGGCGTTGCCCAGGTGCGTGAGAGTGCGGCGTTGCTGGTGCGTTTCGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCG
GCCACGTCACCAAGGAAGGCTCGCTGGCTGGGCCGCGGGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCCCGATGGCCGCTTACGCCTGCTGCGTGCGGTGAAAAATCGCTTTGGCGCGATCAACGAGTTGGGCGTGTTTGGTAT
GACCGACAAGGGCCTCAAGGAAGTGAGCAACCCGTCGGCGATCTTCCTGACCCGCGCTCAGGAAGAAGTGCCAGGCAGCG
TGGTCATGGCGACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATACCAGCCATATGGGCAAT
CCGCGCCGGGTCACCCTGGGGCTGGATCAGAATCGCCTGGCCATGCTGTTGGCGGTGCTGCACCGTCACGGCGGCATTCC
CACCTATGATCAGGACGTGTTTCTCAACGTGGTCGGCGGTGTGAAGGTACTGGAAACGGCATCCGACCTGGCGCTGATGG
CGGCCGTTATATCCAGCTTGCGCAACCGGCCGTTGCCTCACGATCTGCTGGTGTTTGGCGAGGTTGGTTTGTCAGGTGAG
ATACGGCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCCGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAAGGG
CAATGCGCCGAAAGAAGCGCCGCCGGGTCTGCAGGTAGTCGCTGTCACCCGCCTGGAGCAGGCGCTGGACGCGCTCTTCG
AGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.565

99.78

0.485
  radA Streptococcus pneumoniae Rx1

46.841

100

0.474
  radA Streptococcus pneumoniae R6

46.841

100

0.474
  radA Streptococcus pneumoniae TIGR4

46.841

100

0.474
  radA Streptococcus pneumoniae D39

46.841

100

0.474
  radA Streptococcus mitis SK321

47.033

100

0.471
  radA Streptococcus mitis NCTC 12261

46.813

100

0.469