Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K5O18_RS06385 Genome accession   NZ_CP081939
Coordinates   1309494..1311953 (-) Length   819 a.a.
NCBI ID   WP_391484944.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain p4chr1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304494..1316953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS06365 (K5O18_06365) kdsB 1305365..1306147 (-) 783 WP_110479456.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5O18_RS06370 (K5O18_06370) - 1306144..1306326 (-) 183 WP_035685738.1 Trm112 family protein -
  K5O18_RS06375 (K5O18_06375) lpxK 1306501..1307511 (-) 1011 WP_110479455.1 tetraacyldisaccharide 4'-kinase -
  K5O18_RS06380 (K5O18_06380) msbA 1307527..1309275 (-) 1749 WP_035685742.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K5O18_RS06385 (K5O18_06385) rec2 1309494..1311953 (-) 2460 WP_391484944.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5O18_RS06390 (K5O18_06390) thiM 1312443..1313246 (+) 804 WP_035685744.1 hydroxyethylthiazole kinase -
  K5O18_RS06395 (K5O18_06395) thiD 1313258..1314076 (+) 819 WP_222593811.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  K5O18_RS06400 (K5O18_06400) thiE 1314069..1314731 (+) 663 WP_110479452.1 thiamine phosphate synthase -
  K5O18_RS06405 (K5O18_06405) - 1314732..1315952 (+) 1221 WP_110479451.1 NRAMP family divalent metal transporter -

Sequence

Protein


Download         Length: 819 a.a.        Molecular weight: 92143.63 Da        Isoelectric Point: 9.7230

>NTDB_id=598526 K5O18_RS06385 WP_391484944.1 1309494..1311953(-) (rec2) [Avibacterium paragallinarum strain p4chr1]
MGLRLDTLLWLVIAAGLTLLFVPQSFLLEPKQSAWLAGIAVVGCGVAYWIKHQGIAKFFAYGAIFVLCLADFHYQAQQLL
QQAHAVAGLEKRIEREIRIVEVLHQQDYQTLIATAQLDETLPEQRLYVQWQRAEKVAVGQRWRAELSLRPLSSRLNEGGF
DRQKWYFSKGITAYARVKSAVKISEDFSWREARLQTAFQHTQALSMQGLLLALGFGERAWLQPTHWQIYQKTNTAHLIAI
SGLHIGLAMLLGVGIARGIQFCLPTYWITPMFPLFIGAIIALIYAYLAGFSIPTLRALVALGLVCLVRGLRFYHTPWQYF
QRVVAVLIFCQPLMVLSVSFWLSVGAVASLILWYQYVPLDLFQPRTDLVRQDRPFSLGAIIGKRILRWCVALLHLQLGLL
LVFTPVQLYFFHGFSLAGMIANVFAVPLFSFFLVPLVLFAVLSNGAFSSWQGANELAEKITIFLSNWQHKWIDLSQTQSQ
WIGLGLCALGLSYVFGLWQVQKNHSLNRQKSIPFILDRTLAKWKCRLNPDKIPSVLCLKKLGVVLVLIFLVNGGNLLVTH
FRQPDWRLETLDVGQGLATLIVKEQRGILYDTGAAWQNGSMAELEILPYLRRQGIVLDYLILSHDDNDHAGGAEAVLRAY
PNATLITSSEKIERKTHRTSCFAGTQWQWQGLQISALSPQKVVKRAENNDSCVLLIDDGRHKVLLTGDAESQIEPQFIYK
AGKIDVLQVGHHGSKTSTSEALVKTLQPSIALISSGRGNPWHFPHYAVLARLQAQQSAVLNTADFGQIRLSFLAKKPPPE
NISIDTARGTFSPWYRELL

Nucleotide


Download         Length: 2460 bp        

>NTDB_id=598526 K5O18_RS06385 WP_391484944.1 1309494..1311953(-) (rec2) [Avibacterium paragallinarum strain p4chr1]
ATTGGCCTGAGGCTCGATACCCTGTTATGGCTTGTGATCGCCGCGGGCTTAACCTTGCTTTTTGTTCCGCAATCTTTTTT
GCTTGAGCCAAAGCAAAGTGCGTGGCTGGCGGGGATTGCGGTGGTGGGCTGTGGTGTTGCCTATTGGATTAAGCATCAAG
GGATAGCGAAATTTTTCGCCTATGGTGCGATATTTGTGCTATGCCTTGCGGATTTTCATTATCAGGCACAGCAGCTCTTA
CAGCAGGCTCACGCCGTTGCGGGGCTTGAAAAACGTATTGAGCGGGAAATTCGCATTGTCGAAGTACTACATCAGCAAGA
TTATCAAACCCTTATCGCCACCGCTCAGCTTGATGAAACCCTGCCTGAACAACGCCTTTATGTGCAATGGCAAAGGGCGG
AAAAAGTGGCAGTCGGACAGCGTTGGCGAGCGGAATTATCCCTACGTCCATTGTCTAGTCGGCTAAATGAGGGGGGATTT
GATCGGCAAAAATGGTATTTTTCAAAGGGGATTACCGCCTATGCAAGGGTGAAAAGTGCGGTCAAAATTTCGGAGGATTT
TTCTTGGCGGGAAGCAAGGTTACAAACCGCATTTCAGCACACTCAAGCCCTCTCAATGCAAGGGCTATTGCTGGCGTTAG
GGTTTGGTGAACGGGCGTGGTTGCAGCCAACTCATTGGCAAATCTACCAAAAAACCAATACCGCTCATCTTATCGCTATT
TCAGGGCTACATATTGGCTTGGCAATGTTGCTCGGCGTTGGCATTGCTCGAGGGATACAATTTTGCTTGCCGACCTATTG
GATCACGCCGATGTTTCCGCTTTTTATTGGGGCAATAATCGCGTTGATTTATGCCTATTTAGCGGGATTTTCTATTCCCA
CCCTGCGGGCGTTGGTAGCATTGGGACTGGTGTGTTTAGTGCGAGGGTTGCGTTTTTATCACACCCCTTGGCAATATTTT
CAGCGGGTGGTAGCAGTGCTGATTTTCTGCCAGCCGTTAATGGTGCTATCGGTGAGTTTTTGGCTATCAGTGGGAGCAGT
GGCAAGTTTGATTTTATGGTATCAATATGTGCCGTTGGATTTGTTTCAGCCACGAACTGATTTAGTTAGGCAGGATCGCC
CGTTCTCTTTAGGGGCAATAATCGGTAAGCGCATACTACGCTGGTGCGTAGCATTGTTGCATTTGCAACTGGGCTTATTG
TTAGTGTTTACCCCCGTTCAGCTTTACTTTTTTCACGGTTTTTCTTTAGCGGGAATGATCGCGAATGTTTTTGCTGTACC
GTTGTTCAGCTTTTTTCTTGTTCCGCTCGTGCTATTTGCGGTACTCAGTAACGGCGCATTTTCTTCTTGGCAAGGAGCAA
ATGAATTGGCAGAAAAGATCACCATTTTTCTGTCAAATTGGCAACATAAATGGATCGATCTTTCCCAAACGCAATCGCAA
TGGATCGGGCTTGGGCTGTGTGCATTGGGGCTGAGCTATGTTTTTGGCTTATGGCAGGTACAGAAAAATCACTCGCTGAA
TAGGCAAAAATCCATTCCGTTCATTCTAGATCGCACTTTGGCAAAATGGAAATGTAGGTTAAACCCTGACAAAATCCCCT
CAGTATTATGCTTAAAAAAGCTAGGTGTTGTACTGGTGCTTATTTTTCTCGTCAATGGCGGAAATTTGTTGGTAACCCAT
TTTCGGCAACCCGATTGGCGGCTTGAAACCCTTGATGTGGGGCAGGGGCTTGCCACCTTGATCGTGAAAGAGCAGCGGGG
GATTTTGTACGATACGGGGGCGGCTTGGCAAAATGGCAGTATGGCAGAATTAGAAATTTTGCCTTATTTACGGCGGCAGG
GCATTGTGCTGGATTACCTTATTTTAAGCCACGACGACAATGATCACGCAGGCGGGGCTGAAGCGGTGTTGCGGGCTTAT
CCCAATGCGACGCTCATTACGTCATCGGAAAAAATCGAGCGAAAAACGCACCGCACTTCTTGTTTCGCGGGAACGCAATG
GCAGTGGCAAGGGTTGCAGATTTCAGCCCTTTCACCGCAAAAGGTGGTGAAACGAGCGGAAAATAATGATTCGTGCGTGC
TGTTGATCGATGATGGGCGGCATAAAGTGTTGCTCACAGGCGACGCGGAAAGCCAAATTGAACCACAGTTTATTTACAAG
GCAGGGAAAATTGACGTGTTACAGGTCGGACATCACGGCAGCAAAACCTCTACCAGCGAGGCATTGGTGAAAACCTTGCA
ACCTAGCATTGCGTTGATTTCTAGTGGACGGGGAAACCCTTGGCATTTCCCGCATTACGCGGTGTTAGCACGTTTGCAAG
CACAGCAAAGTGCGGTGTTAAATACGGCAGATTTTGGACAAATTCGCCTTTCTTTTTTAGCCAAGAAACCACCGCCTGAA
AATATCAGCATTGACACCGCACGGGGAACGTTTTCCCCTTGGTATCGGGAATTATTGTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(33-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(572-754)

Competence protein (Competence)

(213-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.399

94.139

0.493