Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NBY12_RS16200 Genome accession   NZ_CP098223
Coordinates   3388251..3390254 (+) Length   667 a.a.
NCBI ID   WP_032184853.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3383251..3395254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY12_RS16180 (NBY12_16195) eutP 3383594..3384073 (-) 480 WP_032184851.1 ethanolamine utilization acetate kinase EutP -
  NBY12_RS16185 (NBY12_16200) eutS 3384086..3384421 (-) 336 WP_000356956.1 ethanolamine utilization microcompartment protein EutS -
  NBY12_RS16190 (NBY12_16205) maeB 3384713..3386992 (-) 2280 WP_000342645.1 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase -
  NBY12_RS16195 (NBY12_16210) tal 3387281..3388231 (+) 951 WP_001003725.1 transaldolase -
  NBY12_RS16200 (NBY12_16215) recP/tkt 3388251..3390254 (+) 2004 WP_032184853.1 transketolase Machinery gene
  NBY12_RS16205 (NBY12_16220) ypfG 3390383..3391426 (-) 1044 WP_032303516.1 DUF1176 domain-containing protein -
  NBY12_RS16210 (NBY12_16225) nudK 3391552..3392127 (-) 576 WP_032303517.1 GDP-mannose pyrophosphatase NudK -
  NBY12_RS16215 (NBY12_16230) aegA 3392195..3394174 (-) 1980 WP_032303518.1 formate-dependent uric acid utilization protein AegA -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 73056.75 Da        Isoelectric Point: 6.2536

>NTDB_id=598517 NBY12_RS16200 WP_032184853.1 3388251..3390254(+) (recP/tkt) [Escherichia coli strain Z0117EC0005]
MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFLKHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYD
LPLEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIIDHFTYVFMGDGCLMEG
ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAVKEAILEAQSVKDKPSLI
ICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKLGWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQL
AEEFTRRMSGGLPKDWEKTTQKYINELQANPAKIATRKASQNTLNAYGPMLPELLGGSADLAPSNLTIWKGSVSLKEDPA
GNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLAS
LRLTPNFSTWRPCDQVEAAVGWKLAVERHNGPTALILSRQNLAQVERTPDQVKEIARGGYVLKDSGGKPDIILIATGSEM
EITLQAAEKLAGEGRNVRVVSLPSTDIFDAQDEEYRESVLPSNVAARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPA
DKLFPFFGFTAENIVAKAHKVLGVKGA

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=598517 NBY12_RS16200 WP_032184853.1 3388251..3390254(+) (recP/tkt) [Escherichia coli strain Z0117EC0005]
ATGTCCCGAAAAGACCTTGCCAATGCGATTCGCGCGCTCAGTATGGATGCGGTACAAAAAGCCAATTCTGGTCATCCCGG
CGCGCCGATGGGCATGGCTGATATTGCCGAAGTGCTGTGGAACGATTTTCTTAAACATAACCCCACCGATCCAACCTGGT
ATGATCGCGACCGCTTTATTCTCTCCAACGGTCACGCGTCGATGCTGCTCTACAGTTTGCTTCATCTGACCGGTTACGAC
CTGCCGCTGGAAGAGCTGAAGAACTTCCGTCAGTTGCATTCGAAAACCCCTGGTCACCCGGAGATTGGCTATACGCCTGG
TGTTGAAACCACCACCGGTCCACTTGGACAAGGTTTGGCGAACGCGGTCGGACTGGCGATAGCAGAACGTACACTAGCGG
CGCAGTTTAACCAGCCGGATCATGAAATTATCGATCACTTCACCTATGTGTTTATGGGCGACGGCTGCCTGATGGAAGGT
ATTTCTCACGAAGTCTGTTCGCTGGCGGGCACGCTGGGGCTGGGCAAGCTGATTGGTTTTTACGATCACAATGGTATTTC
CATCGACGGTGAAACCGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATG
AAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATTCTTGAAGCGCAAAGCGTAAAAGATAAGCCGTCGTTGATT
ATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCATGGCGCACCACTGGGGGAAGA
AGAAGTGGCATTGGCACGGCAAAAACTGGGCTGGCATCATCCGCCATTTGAGATCCCCAAAGAGATTTATCACGCCTGGG
ACGCTCGCGAAAAAGGCGAAAAAGCACAGCAGAGCTGGAATGAGAAGTTTGCCGCGTATAAAAAGGCTCATCCGCAACTG
GCAGAAGAGTTTACTCGCCGGATGAGCGGTGGTTTACCAAAAGACTGGGAAAAAACGACGCAGAAATATATCAATGAGTT
GCAGGCGAATCCGGCGAAAATCGCTACTCGTAAGGCTTCGCAAAATACGCTTAACGCTTACGGGCCCATGCTGCCTGAAC
TGCTTGGCGGTTCGGCGGATCTGGCTCCCAGCAACCTCACCATCTGGAAAGGTTCTGTGTCGCTGAAGGAAGATCCAGCG
GGGAATTATATTCACTACGGGGTACGTGAATTTGGCATGACCGCCATCGCCAACGGCATCGCGCACCACGGCGGCTTTGT
GCCGTATACCGCGACGTTCCTGATGTTTGTTGAATACGCCCGTAACGCCGCGCGGATGGCGGCACTGATGAAAGCGCGGC
AAATTATGGTTTATACCCACGACTCAATTGGTCTGGGGGAGGATGGTCCGACGCACCAGGCGGTTGAACAACTTGCAAGT
CTGCGCTTAACGCCGAATTTCAGCACCTGGCGACCGTGTGATCAGGTGGAAGCTGCGGTGGGCTGGAAGCTGGCGGTCGA
GCGTCACAACGGGCCGACGGCGCTGATCCTCTCAAGACAGAATCTGGCCCAGGTGGAACGTACGCCAGATCAGGTAAAAG
AGATTGCCCGCGGTGGTTATGTGTTGAAAGACAGCGGCGGCAAGCCGGATATTATTTTGATTGCCACTGGTTCAGAGATG
GAAATCACCTTGCAAGCAGCGGAGAAATTAGCGGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATAT
TTTCGACGCCCAGGATGAGGAATATCGGGAGTCTGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGCA
TCGCCGATTACTGGTACAAATATGTTGGTCTGAAAGGGGCAATTGTCGGGATGACGGGTTATGGGGAATCTGCTCCTGCG
GATAAGCTGTTCCCGTTCTTTGGCTTTACCGCCGAGAATATTGTGGCAAAAGCGCATAAGGTACTGGGAGTGAAAGGTGC
CTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(539-654)

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-523)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

98.801

0.469