Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NBY12_RS13990 Genome accession   NZ_CP098223
Coordinates   2907553..2908980 (+) Length   475 a.a.
NCBI ID   WP_077756988.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0005     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2902553..2913980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY12_RS13960 (NBY12_13975) - 2903093..2903428 (-) 336 WP_032303295.1 hypothetical protein -
  NBY12_RS13965 (NBY12_13980) - 2903431..2903727 (+) 297 Protein_2724 EutP/PduV family microcompartment system protein -
  NBY12_RS13970 (NBY12_13985) tmaR 2903828..2904157 (-) 330 WP_000450409.1 DUF496 family protein -
  NBY12_RS13975 (NBY12_13990) yeeA 2904329..2905387 (-) 1059 WP_001200890.1 FUSC family protein -
  NBY12_RS13980 (NBY12_13995) sbmC 2905586..2906059 (-) 474 WP_001602831.1 DNA gyrase inhibitor SbmC -
  NBY12_RS13985 (NBY12_14000) dacD 2906178..2907344 (-) 1167 WP_032303296.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NBY12_RS13990 (NBY12_14005) sbcB 2907553..2908980 (+) 1428 WP_077756988.1 exodeoxyribonuclease I Machinery gene
  NBY12_RS13995 (NBY12_14010) plaP 2909054..2910412 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NBY12_RS14000 (NBY12_14015) yoeI 2910402..2910464 (-) 63 WP_010723108.1 membrane protein YoeI -
  NBY12_RS14005 (NBY12_14020) yeeY 2910679..2911608 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  NBY12_RS14010 (NBY12_14025) yeeZ 2911654..2912478 (-) 825 WP_032303297.1 SDR family oxidoreductase -
  NBY12_RS14015 (NBY12_14030) hisL 2912906..2912956 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54527.85 Da        Isoelectric Point: 5.3491

>NTDB_id=598512 NBY12_RS13990 WP_077756988.1 2907553..2908980(+) (sbcB) [Escherichia coli strain Z0117EC0005]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPDVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQYCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=598512 NBY12_RS13990 WP_077756988.1 2907553..2908980(+) (sbcB) [Escherichia coli strain Z0117EC0005]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGATGTTTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAATGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGTATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCCATATTCGCCGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTTTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583