Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   NBY12_RS00420 Genome accession   NZ_CP098223
Coordinates   83626..85455 (+) Length   609 a.a.
NCBI ID   WP_000035580.1    Uniprot ID   B7LU33
Organism   Escherichia coli strain Z0117EC0005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 78626..90455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY12_RS00385 (NBY12_00385) ysgD 78988..79044 (+) 57 WP_212723238.1 YsgD/CorL family protein -
  NBY12_RS00390 (NBY12_00390) corA 79196..80146 (+) 951 WP_000947159.1 magnesium/cobalt transporter CorA -
  NBY12_RS00395 (NBY12_00395) yigF 80189..80569 (-) 381 WP_000032590.1 DUF2628 domain-containing protein -
  NBY12_RS00400 (NBY12_00400) yigG 80583..80963 (-) 381 WP_021521448.1 protein YigG -
  NBY12_RS00405 (NBY12_00405) rarD 81051..81941 (-) 891 WP_032304164.1 EamA family transporter RarD -
  NBY12_RS00410 (NBY12_00410) yigI 81993..82460 (-) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  NBY12_RS00415 (NBY12_00415) pldA 82625..83494 (+) 870 WP_001259701.1 phospholipase A -
  NBY12_RS00420 (NBY12_00420) recQ 83626..85455 (+) 1830 WP_000035580.1 ATP-dependent DNA helicase RecQ Machinery gene
  NBY12_RS00425 (NBY12_00425) rhtC 85519..86139 (+) 621 WP_000928844.1 threonine export protein RhtC -
  NBY12_RS00430 (NBY12_00430) rhtB 86201..86821 (-) 621 WP_000171696.1 homoserine/homoserine lactone efflux protein -
  NBY12_RS00435 (NBY12_00435) pldB 86932..87954 (+) 1023 WP_000487644.1 lysophospholipase L2 -
  NBY12_RS00440 (NBY12_00440) yigL 87962..88762 (+) 801 WP_000285352.1 sugar/pyridoxal phosphate phosphatase YigL -
  NBY12_RS00445 (NBY12_00445) bioP 88838..89737 (+) 900 WP_001196237.1 biotin transporter -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68364.49 Da        Isoelectric Point: 7.0906

>NTDB_id=598474 NBY12_RS00420 WP_000035580.1 83626..85455(+) (recQ) [Escherichia coli strain Z0117EC0005]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=598474 NBY12_RS00420 WP_000035580.1 83626..85455(+) (recQ) [Escherichia coli strain Z0117EC0005]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGGGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAGATTATCGACACCGTACTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACTGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTACTGCTAAACGGTCTTACCGTGGTTGTTTCACCACTGATTTCGTTGATGAAAGAT
CAGGTGGATCAGCTACAGGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAGCTTGAAGT
AATGACAGGCTGCCGCACCGGGCAAATCCGCCTGCTGTATATCGCGCCGGAACGCCTGATGCTGGATAACTTCCTTGAGC
ATCTGGCGCACTGGAATCCAGTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGGCACGATTTCCGCCCG
GAATACGCCGCGCTCGGTCAGCTGCGTCAGCGTTTTCCTACTCTGCCGTTTATGGCGCTAACCGCCACCGCCGACGACAC
CACGCGGCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGATCGCCCGAATATTC
GCTACATGCTGATGGAGAAGTTCAAACCTCTCGATCAGCTGATGCGCTACGTGCAGGAACAACGCGGTAAGTCGGGGATT
ATTTACTGTAATAGTCGTGCGAAAGTAGAAGACACCGCAGCGCGTCTGCAAAGCAAGGGTATCAGCGCAGCGGCTTATCA
CGCCGGGCTTGAAAACGATGTCCGTGCGGACGTGCAGGAAAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAATAAACCAAACGTCCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCAGCGGATATGGCGTG
GCTGCGCCGTTGCCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAACGTCATAAACTCAATGCGATGGGCGCGT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTGCTGCTGAACTATTTTGGCGAAGGGCGGCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAGTACGATGGTTCAACCGATGCGCAGATTGCGCTTTCCACCATTGGTCGTGTGAA
TCAGCGTTTTGGTATGGGCTATGTAGTGGAAGTGATTCGCGGCGCCAATAACCAGCGAATCCGCGACTATGGTCATGACA
AACTGAAAGTCTACGGCATGGGTCGCGATAAAAGCCATGAACATTGGGTCAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCGCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGTTGCGCGGCGAATCCTC
TTTACAACTTGCCGTGCCGCGTATTGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGTGGCAATTACGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCCATTGCTGATGAAAGTAATGTCCCGCCGTATGTGGTGTTTAACGAC
GCGACCCTGATTGAGATGGCGGAACAGATGCCAATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGGATGCGCAA
ACTGGAGCGCTTTGGCAAACCGTTTATGGCACTTATCCGTGCGCATGTCGATGGCGACGACGAAGAGTAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

DEAD/DEAH box helicase (DEAD)

(28-187)

HRDC domain (HRDC)

(533-599)

RQC domain (RQC)

(406-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LU33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.372

97.209

0.392