Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NBY12_RS00065 Genome accession   NZ_CP098223
Coordinates   12962..13954 (+) Length   330 a.a.
NCBI ID   WP_000224481.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0005     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7962..18954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY12_RS00040 (NBY12_00040) rbsD 8086..8505 (+) 420 WP_000715936.1 D-ribose pyranase -
  NBY12_RS00045 (NBY12_00045) rbsA 8513..10018 (+) 1506 WP_032304126.1 ribose ABC transporter ATP-binding protein RbsA -
  NBY12_RS00050 (NBY12_00050) rbsC 10023..10988 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  NBY12_RS00055 (NBY12_00055) rbsB 11013..11903 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  NBY12_RS00060 (NBY12_00060) rbsK 12029..12958 (+) 930 WP_032304130.1 ribokinase -
  NBY12_RS00065 (NBY12_00065) cytR 12962..13954 (+) 993 WP_000224481.1 ribose operon transcriptional repressor RbsR Regulator
  NBY12_RS00070 (NBY12_00070) mdtD 13920..15347 (-) 1428 WP_001280843.1 multidrug transporter subunit MdtD -
  NBY12_RS00075 (NBY12_00075) yieP 15370..16062 (-) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36630.95 Da        Isoelectric Point: 5.2227

>NTDB_id=598469 NBY12_RS00065 WP_000224481.1 12962..13954(+) (cytR) [Escherichia coli strain Z0117EC0005]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTRTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=598469 NBY12_RS00065 WP_000224481.1 12962..13954(+) (cytR) [Escherichia coli strain Z0117EC0005]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTCATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACTGCCAAAGTTGAAGCGGCAATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAGCTCAATCAGACTCGAACCATTGGCATGTTGATTACTGCCAGTACCAATCCTTTTTATTCTGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAGCGCGGCTATAGTCTTGTTCTTTGCAATACCGAAGGCGATGAGCAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAGCGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCACCATTCGATGGCGACAGCGATCTCATTCAGGATAAT
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364