Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J67_RS02090 Genome accession   NZ_AP018776
Coordinates   412992..413645 (-) Length   217 a.a.
NCBI ID   WP_014551147.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-5 isolate 13H30     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 407992..418645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J67_RS02090 (CHBNIII5_03950) sxy/tfoX 412992..413645 (-) 654 WP_014551147.1 DNA transformation protein TfoX Regulator
  K6J67_RS02095 (CHBNIII5_03960) recA 414018..415082 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  K6J67_RS02100 (CHBNIII5_03970) recX 415161..415619 (+) 459 WP_005688257.1 recombination regulator RecX -
  K6J67_RS02105 crcB 415616..416002 (-) 387 WP_005688259.1 fluoride efflux transporter CrcB -
  K6J67_RS02110 (CHBNIII5_03990) - 416002..416820 (-) 819 WP_005688261.1 Cof-type HAD-IIB family hydrolase -
  K6J67_RS02115 (CHBNIII5_04000) - 417223..418227 (+) 1005 WP_005651072.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=59843 K6J67_RS02090 WP_014551147.1 412992..413645(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MNIKDEHIESVCSLLDRLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=59843 K6J67_RS02090 WP_014551147.1 412992..413645(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCTTTGTTAGATCGGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAGCGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(15-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.157

100

0.982

Multiple sequence alignment