Detailed information NTG0598392

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NBY13_RS01085
• Genome accession: NZ_CP098219
• Coordinates: 225015..226040 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain Z0117EC0013
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 220015..231040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBY13_RS01055 (NBY13_01055)	zapB	220099..220344 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
NBY13_RS01060 (NBY13_01060)	rraA	220429..220914 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NBY13_RS01065 (NBY13_01065)	menA	221007..221933 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NBY13_RS01070 (NBY13_01070)	hslU	222000..223331 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
NBY13_RS01075 (NBY13_01075)	hslV	223341..223871 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NBY13_RS01080 (NBY13_01080)	ftsN	223964..224923 (-)	960	WP_000068834.1	cell division protein FtsN	-
NBY13_RS01085 (NBY13_01085)	cytR	225015..226040 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
NBY13_RS01090 (NBY13_01090)	priA	226196..228394 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
NBY13_RS01095 (NBY13_01095)	rpmE	228597..228809 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
NBY13_RS01100 (NBY13_01100)	yiiX	228870..229478 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
NBY13_RS01105 (NBY13_01105)	metJ	229538..229855 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=598392 NBY13_RS01085 WP_000644908.1 225015..226040(-) (cytR) [Escherichia coli strain Z0117EC0013]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=598392 NBY13_RS01085 WP_000644908.1 225015..226040(-) (cytR) [Escherichia coli strain Z0117EC0013]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625