Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NBY14_RS14765 Genome accession   NZ_CP098217
Coordinates   3093245..3094672 (+) Length   475 a.a.
NCBI ID   WP_072198855.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0032     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3088245..3099672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY14_RS14740 (NBY14_14740) lamB 3088483..3089505 (-) 1023 Protein_2879 maltoporin LamB -
  NBY14_RS14745 (NBY14_14745) - 3089554..3089961 (-) 408 Protein_2880 IS5-like element IS903B family transposase -
  NBY14_RS14750 (NBY14_14750) - 3090041..3090916 (-) 876 WP_001617865.1 extended-spectrum class A beta-lactamase CTX-M-14 -
  NBY14_RS14755 (NBY14_14755) - 3091166..3092428 (-) 1263 WP_000608644.1 IS1380-like element ISEcp1 family transposase -
  NBY14_RS14760 (NBY14_14760) - 3092614..3093036 (-) 423 Protein_2883 serine hydrolase -
  NBY14_RS14765 (NBY14_14765) sbcB 3093245..3094672 (+) 1428 WP_072198855.1 exodeoxyribonuclease I Machinery gene
  NBY14_RS14770 (NBY14_14770) tsuB 3094715..3094942 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NBY14_RS14775 (NBY14_14775) tsuA 3094956..3096014 (-) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  NBY14_RS14780 (NBY14_14780) plaP 3096193..3097551 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NBY14_RS14785 (NBY14_14785) yoeI 3097541..3097603 (-) 63 WP_010723108.1 membrane protein YoeI -
  NBY14_RS14790 (NBY14_14790) yeeY 3097818..3098747 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NBY14_RS14795 (NBY14_14795) yeeZ 3098793..3099617 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.80 Da        Isoelectric Point: 5.6070

>NTDB_id=598345 NBY14_RS14765 WP_072198855.1 3093245..3094672(+) (sbcB) [Escherichia coli strain Z0117EC0032]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=598345 NBY14_RS14765 WP_072198855.1 3093245..3094672(+) (sbcB) [Escherichia coli strain Z0117EC0032]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGTTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579