Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NBY14_RS01305 Genome accession   NZ_CP098217
Coordinates   269502..270527 (-) Length   341 a.a.
NCBI ID   WP_000644908.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0032     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 264502..275527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY14_RS01275 (NBY14_01275) zapB 264586..264831 (+) 246 WP_001296623.1 septal ring assembly protein ZapB -
  NBY14_RS01280 (NBY14_01280) rraA 264916..265401 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  NBY14_RS01285 (NBY14_01285) menA 265494..266420 (-) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  NBY14_RS01290 (NBY14_01290) hslU 266487..267818 (-) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  NBY14_RS01295 (NBY14_01295) hslV 267828..268358 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  NBY14_RS01300 (NBY14_01300) ftsN 268451..269410 (-) 960 WP_000068834.1 cell division protein FtsN -
  NBY14_RS01305 (NBY14_01305) cytR 269502..270527 (-) 1026 WP_000644908.1 DNA-binding transcriptional regulator CytR Regulator
  NBY14_RS01310 (NBY14_01310) priA 270683..272881 (-) 2199 WP_001550368.1 primosomal protein N' Machinery gene
  NBY14_RS01315 (NBY14_01315) rpmE 273084..273296 (+) 213 WP_000710769.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37847.80 Da        Isoelectric Point: 6.3842

>NTDB_id=598309 NBY14_RS01305 WP_000644908.1 269502..270527(-) (cytR) [Escherichia coli strain Z0117EC0032]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=598309 NBY14_RS01305 WP_000644908.1 269502..270527(-) (cytR) [Escherichia coli strain Z0117EC0032]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625