Detailed information NTG0598303

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: K6T40_RS05390
• Genome accession: NZ_CP081923
• Coordinates: 1108939..1110042 (-)
• Length: 367 a.a.
• NCBI ID: WP_014938005.1
• Uniprot ID: J9R5B4
• Organism: Riemerella anatipestifer strain 20160930RA1
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1103939..1115042

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6T40_RS05365 (K6T40_05365)	comF	1105132..1105785 (-)	654	WP_038693798.1	ComF family protein	Machinery gene
K6T40_RS05375 (K6T40_05375)	-	1106012..1106563 (-)	552	WP_014938008.1	hypothetical protein	-
K6T40_RS05380 (K6T40_05380)	-	1106615..1107265 (-)	651	WP_014938007.1	HD domain-containing protein	-
K6T40_RS05385 (K6T40_05385)	gdhA	1107397..1108755 (-)	1359	WP_014938006.1	NADP-specific glutamate dehydrogenase	-
K6T40_RS05390 (K6T40_05390)	dprA	1108939..1110042 (-)	1104	WP_014938005.1	DNA-processing protein DprA	Machinery gene
K6T40_RS05395 (K6T40_05395)	-	1110045..1110422 (-)	378	WP_014938004.1	group III truncated hemoglobin	-
K6T40_RS05400 (K6T40_05400)	ruvC	1110433..1110987 (-)	555	WP_014938003.1	crossover junction endodeoxyribonuclease RuvC	-
K6T40_RS05405 (K6T40_05405)	-	1111040..1111513 (-)	474	WP_038693795.1	Lrp/AsnC family transcriptional regulator	-
K6T40_RS05410 (K6T40_05410)	-	1111861..1114791 (+)	2931	WP_038693793.1	SusC/RagA family TonB-linked outer membrane protein	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 40200.07 Da
• Isoelectric Point: 6.6101

>NTDB_id=598303 K6T40_RS05390 WP_014938005.1 1108939..1110042(-) (dprA) [Riemerella anatipestifer strain 20160930RA1]
MVNAEEILYSIALRRSPLVGDVTFANLVGEVGSAKEVWSLSQSELRKISGIGKQIASGIGDESLLKFAEREVEFCIKNEI
KINLRHLNQLPRLLGECYDAPAILFQKGDYDDTANNISIVGTRNATAYGKSFLEDLIVQFKNKNIQVISGLALGTDGIAH
QEALKNNIKTSAVLAHGLHIVYPSKHKILAEEILSNGGALFSEFCSDEKPDREHFLQRNRIVAGLSANTIVVESAYAGGS
ISTASFANQYNREVYALAGRLTDKYSQGCNHLIFQNKAKIISSIKGLLKDLDLDNTSKVLELFPLVDVALTPVQKPIYDA
IKGGNDISLDDLSEKLNQPISKVFPVLLELELLGLIRANSGRKYSII

Nucleotide

• Length: 1104 bp

>NTDB_id=598303 K6T40_RS05390 WP_014938005.1 1108939..1110042(-) (dprA) [Riemerella anatipestifer strain 20160930RA1]
ATGGTAAATGCAGAAGAAATTTTATATTCTATTGCTTTACGGCGAAGCCCTTTGGTGGGAGATGTTACATTTGCAAATTT
AGTGGGCGAAGTTGGTTCTGCTAAGGAGGTTTGGAGTTTGTCTCAATCGGAGTTAAGAAAAATATCAGGCATAGGTAAAC
AAATTGCCTCAGGTATTGGTGATGAAAGCCTTTTGAAATTTGCCGAAAGGGAAGTTGAGTTCTGCATTAAAAACGAGATA
AAAATCAATCTAAGACATCTTAATCAGCTTCCTCGTCTTTTAGGTGAATGTTATGATGCTCCAGCTATTCTTTTTCAAAA
AGGAGATTATGACGATACCGCTAATAATATTAGCATTGTTGGGACGAGAAATGCCACTGCTTATGGTAAGTCGTTTTTGG
AGGATTTAATTGTTCAGTTTAAAAATAAAAATATTCAAGTCATTAGTGGGTTGGCACTAGGTACAGACGGGATAGCTCAT
CAAGAGGCTTTAAAAAATAACATAAAAACTTCAGCAGTTTTAGCACATGGTTTACATATTGTTTATCCGTCTAAACATAA
AATTCTTGCTGAAGAAATATTAAGTAATGGAGGAGCTTTGTTCTCTGAATTCTGCTCTGATGAAAAACCAGATAGAGAAC
ATTTTTTGCAAAGGAATCGTATTGTGGCAGGGCTTTCGGCTAATACGATTGTGGTAGAGTCTGCTTATGCTGGCGGTTCT
ATTAGTACGGCGAGTTTTGCTAATCAGTATAATAGAGAAGTGTATGCTCTTGCGGGGCGTCTTACTGATAAGTATAGCCA
AGGCTGCAATCATCTTATTTTTCAAAATAAAGCTAAAATCATATCTTCTATTAAAGGTTTGCTAAAAGACCTAGATTTGG
ATAATACTTCTAAAGTTTTGGAGCTTTTTCCTTTAGTTGATGTCGCTTTAACTCCTGTTCAAAAACCTATTTATGATGCT
ATTAAAGGAGGTAATGATATTTCTTTAGATGACTTGTCAGAAAAATTAAATCAACCCATTTCTAAAGTGTTTCCAGTTTT
GTTAGAATTAGAATTATTGGGGTTGATAAGAGCAAATTCTGGGAGGAAATATTCTATCATTTAG

Domains

Predicted by InterproScan.

• DprA winged helix domain (DprA_WH) (309-361)

• DNA recombination-mediator protein A (DNA_processg_A) (77-281)

3D structure

• AlphaFold DB: J9R5B4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Riemerella anatipestifer ATCC 11845 = DSM 15868	92.916	100	0.929