Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NBY15_RS09505 Genome accession   NZ_CP098214
Coordinates   1971680..1973107 (-) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0036     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1966680..1978107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY15_RS09475 (NBY15_09470) yeeZ 1966735..1967559 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NBY15_RS09480 (NBY15_09475) yeeY 1967605..1968534 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  NBY15_RS09485 (NBY15_09480) yoeI 1968749..1968811 (+) 63 WP_010723108.1 membrane protein YoeI -
  NBY15_RS09490 (NBY15_09485) plaP 1968801..1970159 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NBY15_RS09495 (NBY15_09490) tsuA 1970338..1971396 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  NBY15_RS09500 (NBY15_09495) tsuB 1971410..1971637 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NBY15_RS09505 (NBY15_09500) sbcB 1971680..1973107 (-) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  NBY15_RS09510 (NBY15_09505) dacD 1973316..1974482 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NBY15_RS09515 (NBY15_09510) sbmC 1974601..1975074 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  NBY15_RS09520 (NBY15_09515) yeeA 1975272..1976330 (+) 1059 WP_168926339.1 FUSC family protein -
  NBY15_RS09525 (NBY15_09520) tmaR 1976502..1976831 (+) 330 WP_000450409.1 DUF496 family protein -
  NBY15_RS25605 - 1976932..1977114 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NBY15_RS25610 - 1977234..1977314 (+) 81 WP_023441679.1 hypothetical protein -
  NBY15_RS09535 (NBY15_09530) - 1977603..1977683 (-) 81 Protein_1873 hypothetical protein -
  NBY15_RS09540 (NBY15_09535) yeeW 1977729..1977923 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=598250 NBY15_RS09505 WP_000980570.1 1971680..1973107(-) (sbcB) [Escherichia coli strain Z0117EC0036]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=598250 NBY15_RS09505 WP_000980570.1 1971680..1973107(-) (sbcB) [Escherichia coli strain Z0117EC0036]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581