Detailed information NTG0598038

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NBY18_RS23345
• Genome accession: NZ_CP098206
• Coordinates: 4787261..4788286 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain Z0117EC0054
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4782261..4793286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBY18_RS23325 (NBY18_23315)	metJ	4783446..4783763 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NBY18_RS23330 (NBY18_23320)	yiiX	4783823..4784431 (+)	609	WP_000702319.1	YiiX family permuted papain-like enzyme	-
NBY18_RS23335 (NBY18_23325)	rpmE	4784492..4784704 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NBY18_RS23340 (NBY18_23330)	priA	4784907..4787105 (+)	2199	WP_001350873.1	primosomal protein N'	Machinery gene
NBY18_RS23345 (NBY18_23335)	cytR	4787261..4788286 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NBY18_RS23350 (NBY18_23340)	ftsN	4788378..4789337 (+)	960	WP_000068834.1	cell division protein FtsN	-
NBY18_RS23355 (NBY18_23345)	hslV	4789430..4789960 (+)	531	WP_000208235.1	ATP-dependent protease subunit HslV	-
NBY18_RS23360 (NBY18_23350)	hslU	4789970..4791301 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
NBY18_RS23365 (NBY18_23355)	menA	4791368..4792294 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NBY18_RS23370 (NBY18_23360)	rraA	4792387..4792872 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NBY18_RS23375 (NBY18_23365)	zapB	4792957..4793202 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=598038 NBY18_RS23345 WP_000644904.1 4787261..4788286(+) (cytR) [Escherichia coli strain Z0117EC0054]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=598038 NBY18_RS23345 WP_000644904.1 4787261..4788286(+) (cytR) [Escherichia coli strain Z0117EC0054]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACTCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCACAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACAGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCTGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGTTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628