Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K6T22_RS04940 Genome accession   NZ_CP081878
Coordinates   961724..963430 (+) Length   568 a.a.
NCBI ID   WP_238239205.1    Uniprot ID   -
Organism   Exiguobacterium acetylicum strain UTDF19-27C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 956724..968430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T22_RS04915 (K6T22_04910) xseB 957203..957424 (+) 222 WP_023467583.1 exodeoxyribonuclease VII small subunit -
  K6T22_RS04920 (K6T22_04915) - 957421..958290 (+) 870 WP_238239201.1 polyprenyl synthetase family protein -
  K6T22_RS04925 (K6T22_04920) dxs 958408..960294 (+) 1887 WP_238239202.1 1-deoxy-D-xylulose-5-phosphate synthase -
  K6T22_RS04930 (K6T22_04925) - 960301..961107 (+) 807 WP_238239203.1 TlyA family RNA methyltransferase -
  K6T22_RS04935 (K6T22_04930) argR 961262..961711 (+) 450 WP_238239204.1 transcriptional regulator ArgR -
  K6T22_RS04940 (K6T22_04935) recN 961724..963430 (+) 1707 WP_238239205.1 DNA repair protein RecN Machinery gene
  K6T22_RS04945 (K6T22_04940) spo0A 963434..964156 (+) 723 WP_283205701.1 sporulation transcription factor Spo0A -
  K6T22_RS04950 (K6T22_04945) - 964407..964985 (-) 579 WP_238239206.1 dihydrofolate reductase family protein -
  K6T22_RS04955 (K6T22_04950) - 965662..965916 (-) 255 WP_238239207.1 DUF2627 family protein -
  K6T22_RS04960 (K6T22_04955) - 966040..967695 (+) 1656 WP_238239208.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64238.87 Da        Isoelectric Point: 4.5994

>NTDB_id=598002 K6T22_RS04940 WP_238239205.1 961724..963430(+) (recN) [Exiguobacterium acetylicum strain UTDF19-27C]
MLAELSIKQFAIIDELQIDFKKGMTVLTGETGAGKSIVLDAIGLLIGGRGSSEFVRYGEDRAELEGLFLIEDDHLVYDLA
EEYGIDIEDGLIILRRDLFATGKSVCRVNNKLVTLTILREFGRVLVDMHGQHEHQHLMDSTYHQAILDDFAQEAIAPLLQ
SYQSGYQAYEEKRMALQSLAQSEQELAQRIDLLSFQTEEIEGAKLRAHEEDELLVERNRLANFEKLYASLKTAYDALHDE
MRGIDSVGDAMRELQQASSIDEQFSQQSDAIASAFYGLEEVGYAIRDQLETLEFDSNRLDEIEQRLSVFQQLKRKYGATI
EEVIAYGEKIRVELDTMTNRDERIERLKAEVEQLEGELFEIGGRLSQQRRKAAIQLSEAIHLELRELYMEKARFEIRFLQ
DGKTPMLRKNGIDQVEFFIMTNAGEPFKSLGKVASGGELSRIMLGLKSIFSRSVGVASIIFDEVDTGVSGRVAQAMAEKI
YRLSVDGQVLCITHLPQVASMADQHLYIRKIEETDRTTTQVNVLSQSDRGNELGRMISGAHMTDLTLRHAEELMDQAKMM
KESLKNGV

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=598002 K6T22_RS04940 WP_238239205.1 961724..963430(+) (recN) [Exiguobacterium acetylicum strain UTDF19-27C]
ATGCTAGCTGAATTATCGATCAAACAATTTGCGATCATTGACGAGCTACAGATCGACTTTAAAAAAGGAATGACCGTCTT
GACTGGGGAAACAGGTGCCGGTAAATCGATCGTTCTCGACGCAATCGGTTTGTTGATTGGTGGACGTGGATCTTCGGAAT
TCGTTCGATACGGGGAAGATCGGGCGGAACTAGAAGGACTATTTCTGATTGAAGACGACCATCTCGTCTATGATCTCGCA
GAAGAGTATGGCATCGATATCGAAGATGGATTGATCATCTTACGACGTGATCTGTTCGCGACCGGGAAAAGTGTCTGTCG
TGTCAACAATAAGCTGGTCACACTGACGATCTTACGTGAGTTCGGGCGTGTTCTCGTCGACATGCACGGACAACATGAAC
ATCAGCATTTAATGGACAGTACGTATCATCAAGCGATTCTCGATGACTTCGCACAAGAGGCGATTGCACCGCTACTACAA
TCCTATCAGTCGGGCTATCAAGCATACGAAGAAAAACGGATGGCTTTGCAATCGCTCGCGCAAAGTGAGCAAGAACTTGC
ACAACGGATTGATCTGTTATCGTTTCAGACGGAAGAGATTGAAGGGGCAAAACTTCGGGCACATGAGGAAGATGAGTTGC
TCGTCGAACGAAATCGTCTTGCGAACTTCGAGAAGTTATATGCGTCGCTTAAGACAGCGTATGATGCTCTACATGATGAG
ATGCGCGGTATCGATTCCGTCGGTGACGCGATGCGTGAATTGCAGCAAGCATCAAGTATCGATGAGCAGTTTTCTCAGCA
GAGTGACGCGATCGCAAGCGCTTTTTATGGACTAGAAGAAGTGGGGTACGCAATTCGAGATCAACTCGAAACACTCGAGT
TCGACTCCAATCGACTTGATGAGATTGAACAGCGTTTATCGGTCTTTCAACAGTTGAAACGAAAATACGGGGCAACGATT
GAGGAAGTCATCGCGTATGGTGAGAAGATTCGAGTGGAACTCGATACGATGACGAATCGAGATGAACGGATTGAACGTTT
AAAAGCCGAAGTCGAACAGCTCGAAGGCGAATTGTTTGAGATTGGTGGTCGACTCTCGCAACAACGGCGTAAAGCAGCGA
TTCAATTAAGTGAAGCGATTCATTTGGAGTTGCGTGAGCTTTACATGGAAAAAGCACGGTTTGAAATTCGTTTTCTTCAG
GACGGGAAGACACCGATGCTACGCAAGAACGGAATCGACCAAGTCGAGTTCTTCATCATGACGAATGCGGGAGAGCCGTT
TAAATCACTTGGAAAAGTTGCGTCAGGTGGAGAATTATCTCGAATCATGCTTGGACTGAAATCGATTTTCTCACGCTCGG
TCGGCGTCGCTTCCATCATTTTCGATGAAGTCGATACGGGTGTCTCGGGTCGTGTCGCGCAAGCGATGGCTGAAAAAATC
TATCGTTTGTCAGTAGACGGACAAGTGCTCTGTATCACGCACTTACCGCAAGTCGCTTCAATGGCTGATCAACATCTGTA
TATTCGAAAAATCGAAGAGACGGACCGTACGACGACACAGGTCAATGTCTTGTCTCAGTCAGATCGAGGAAATGAGCTCG
GACGGATGATTTCCGGTGCACATATGACGGACTTGACGTTACGTCATGCCGAAGAGTTGATGGATCAGGCGAAGATGATG
AAAGAATCGCTTAAAAATGGGGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.043

100

0.537