Detailed information NTG0597987

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: K6T24_RS25270
• Genome accession: NZ_CP081872
• Coordinates: 4924672..4926021 (-)
• Length: 449 a.a.
• NCBI ID: WP_238185720.1
• Uniprot ID: -
• Organism: Bacillus toyonensis strain UTDF19-29B
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4919672..4931021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6T24_RS25250 (K6T24_25145)	secA	4920000..4922507 (-)	2508	WP_000579397.1	preprotein translocase subunit SecA	-
K6T24_RS25255 (K6T24_25150)	hpf	4922783..4923325 (-)	543	WP_000671188.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
K6T24_RS25260 (K6T24_25155)	cspC	4923644..4923841 (-)	198	WP_002045823.1	cold shock protein CspC	-
K6T24_RS25265 (K6T24_25160)	-	4923968..4924672 (-)	705	WP_238185719.1	ComF family protein	-
K6T24_RS25270 (K6T24_25165)	comFA	4924672..4926021 (-)	1350	WP_238185720.1	ATP-dependent helicase ComFA	Machinery gene
K6T24_RS25275 (K6T24_25170)	-	4926148..4927545 (-)	1398	WP_238185721.1	NlpC/P60 family protein	-
K6T24_RS25280 (K6T24_25175)	-	4927706..4928020 (-)	315	WP_000400852.1	helix-turn-helix domain-containing protein	-
K6T24_RS25285 (K6T24_25180)	-	4928192..4929034 (-)	843	WP_000844773.1	DegV family protein	-
K6T24_RS25290 (K6T24_25185)	-	4929273..4929908 (+)	636	WP_000926675.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 50946.68 Da
• Isoelectric Point: 9.4280

>NTDB_id=597987 K6T24_RS25270 WP_238185720.1 4924672..4926021(-) (comFA) [Bacillus toyonensis strain UTDF19-29B]
MLSGKQLLLEELSTDVRDNLDDLNKKGEVVCVQGVKNKASTYMCQRCGNIAQRLFSSFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIVEKKGEMDVNPLQWKGNLSTGQELAAQGVMEAVKQKESFFIWAVCGAGKTEMLFYGIAEALQKGERVCIAT
PRTDVVLELAPRLKEVFPNINVAALYGGSLDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHGDQMLQYAVKQAM
KEKAACIYLTATPDEEWKRNLRKGKQKGIVVSGRYHRHPLPVPKFCWCGNWKKSLINKRIPQVLLQWLKVYLNKKYPIFL
FVPHVRYIEEMSLLLKLLDDRVAGVHAEDPMRKEKVTAFRKGEIPLLVTTTILERGVTVKNLQVAVLGTEEEIFSESALV
QIAGRVGRSFEEPYGEVIYFHYGKTEAMVRAKKHIRSMNKNAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=597987 K6T24_RS25270 WP_238185720.1 4924672..4926021(-) (comFA) [Bacillus toyonensis strain UTDF19-29B]
ATGTTATCTGGGAAACAGTTATTATTAGAAGAACTCTCTACAGACGTACGGGATAATTTAGATGATTTGAATAAGAAGGG
AGAGGTCGTATGTGTACAAGGTGTAAAAAATAAGGCTTCTACATATATGTGTCAGCGTTGCGGAAATATAGCACAAAGAC
TCTTTTCATCATTTTTGTGTAAAAGGTGTAGTAAAGTTTGCACATATTGCCGGAAGTGCATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGTGGAATTGTTGAAAAAAAGGGAGAAATGGATGTAAACCCGTTACAGTGGAAAGGAAATTT
ATCTACTGGCCAGGAGTTGGCTGCGCAAGGTGTTATGGAGGCTGTTAAACAGAAAGAATCGTTTTTTATTTGGGCTGTGT
GCGGCGCTGGAAAAACAGAAATGTTGTTTTATGGTATTGCAGAGGCACTTCAAAAAGGAGAAAGGGTTTGTATTGCAACG
CCGAGAACGGATGTTGTACTTGAATTAGCACCGAGATTGAAAGAAGTATTTCCGAATATAAATGTAGCTGCTTTATACGG
TGGGAGTTTAGATCGGGAAAAAGATGCAGCGTTAGTCGTTGCGACCACCCATCAGCTATTGCGTTATTATAGAGCGTTTC
ATGTCATGATTGTAGATGAAATAGATGCCTTTCCATACCATGGAGATCAAATGTTGCAGTATGCGGTAAAACAAGCGATG
AAAGAGAAAGCGGCATGTATTTATTTAACTGCAACTCCAGATGAAGAGTGGAAGCGTAACCTTAGAAAGGGGAAACAAAA
AGGTATCGTTGTTTCTGGACGGTATCACCGTCATCCGTTGCCAGTCCCCAAATTTTGTTGGTGCGGAAACTGGAAGAAAA
GCCTCATCAATAAAAGAATTCCTCAAGTTTTACTACAATGGTTAAAAGTATACTTAAATAAAAAGTACCCCATTTTTTTA
TTTGTTCCCCATGTGCGATATATAGAAGAAATGAGTCTGTTATTGAAGTTGTTAGACGATAGAGTTGCCGGTGTGCATGC
AGAAGATCCAATGAGAAAAGAGAAAGTTACAGCTTTCAGAAAGGGAGAAATTCCTTTATTAGTTACAACGACGATTTTGG
AGAGAGGAGTAACGGTGAAAAATTTGCAAGTTGCGGTTTTAGGGACGGAAGAAGAAATATTTTCAGAAAGCGCACTCGTA
CAAATTGCAGGCCGGGTAGGTCGTAGTTTTGAAGAGCCGTATGGAGAGGTCATTTATTTTCATTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACACATTCGAAGTATGAACAAAAATGCGAAAGAACAAGGGTTAATCGATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (313-408)

• Type III restriction enzyme, res subunit (ResIII) (106-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50	98.441	0.492
comFA	Latilactobacillus sakei subsp. sakei 23K	40.447	89.755	0.363