Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K6T24_RS20985 Genome accession   NZ_CP081872
Coordinates   4133275..4134021 (-) Length   248 a.a.
NCBI ID   WP_085450589.1    Uniprot ID   -
Organism   Bacillus toyonensis strain UTDF19-29B     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4128275..4139021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T24_RS20965 (K6T24_20870) dnaG 4129035..4130831 (-) 1797 WP_000528230.1 DNA primase -
  K6T24_RS20970 (K6T24_20875) - 4131085..4131324 (-) 240 WP_002044942.1 DUF188 domain-containing protein -
  K6T24_RS20975 (K6T24_20880) - 4131693..4132505 (-) 813 WP_000368950.1 pyruvate, water dikinase regulatory protein -
  K6T24_RS20980 (K6T24_20885) - 4132535..4133167 (-) 633 WP_000583755.1 helix-turn-helix transcriptional regulator -
  K6T24_RS20985 (K6T24_20890) recO 4133275..4134021 (-) 747 WP_085450589.1 DNA repair protein RecO Machinery gene
  K6T24_RS20990 (K6T24_20895) - 4134055..4134198 (-) 144 WP_000883923.1 YqzL family protein -
  K6T24_RS20995 (K6T24_20900) era 4134371..4135276 (-) 906 WP_001080234.1 GTPase Era -
  K6T24_RS21000 (K6T24_20905) - 4135269..4135667 (-) 399 WP_001086291.1 cytidine deaminase -
  K6T24_RS21005 (K6T24_20910) - 4135766..4136119 (-) 354 WP_000715512.1 diacylglycerol kinase family protein -
  K6T24_RS21010 (K6T24_20915) ybeY 4136116..4136586 (-) 471 WP_000054674.1 rRNA maturation RNase YbeY -
  K6T24_RS21015 (K6T24_20920) - 4136583..4138727 (-) 2145 WP_000091506.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28648.22 Da        Isoelectric Point: 8.0566

>NTDB_id=597977 K6T24_RS20985 WP_085450589.1 4133275..4134021(-) (recO) [Bacillus toyonensis strain UTDF19-29B]
MFQKVEGIVIRTTDYGETNKIVTIFSREFGKISVMARGAKKPKSRLASVSQLMTHGHFLIQVGSGLGTLQQGEIISTMKE
IREDIFLTAYASFVVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=597977 K6T24_RS20985 WP_085450589.1 4133275..4134021(-) (recO) [Bacillus toyonensis strain UTDF19-29B]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAATAAGATTGTTACAATATTCTCAAG
AGAATTCGGTAAGATAAGTGTAATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGGCATTTTCTTATTCAAGTGGGATCTGGGCTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTGTTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTACTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCTGTATTAGGGATGCGCCCGTATTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCGGAGCAAGATCCGTATCGTATACCGGTGGG
AGAAGCTGTACATAAATTGTTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGCTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTCCTA
GAGCAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

56.68

99.597

0.565