Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K6T24_RS19360 Genome accession   NZ_CP081872
Coordinates   3851618..3852052 (-) Length   144 a.a.
NCBI ID   WP_000811505.1    Uniprot ID   -
Organism   Bacillus toyonensis strain UTDF19-29B     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3846618..3857052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T24_RS19345 (K6T24_19270) - 3847786..3848343 (+) 558 WP_000062081.1 PadR family transcriptional regulator -
  K6T24_RS19350 (K6T24_19275) metE 3848867..3851155 (+) 2289 WP_001007621.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  K6T24_RS19355 (K6T24_19280) - 3851193..3851582 (-) 390 WP_000424019.1 competence protein ComJ -
  K6T24_RS19360 (K6T24_19285) nucA/comI 3851618..3852052 (-) 435 WP_000811505.1 DNA-entry nuclease Machinery gene
  K6T24_RS19365 (K6T24_19290) - 3852291..3853040 (+) 750 WP_238185588.1 DUF3967 domain-containing protein -
  K6T24_RS19370 (K6T24_19295) - 3853079..3854353 (-) 1275 WP_000420365.1 HAMP domain-containing sensor histidine kinase -
  K6T24_RS19375 (K6T24_19300) - 3854665..3854865 (+) 201 WP_000929282.1 hypothetical protein -
  K6T24_RS19380 (K6T24_19305) - 3854984..3856147 (+) 1164 WP_238185589.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15938.31 Da        Isoelectric Point: 8.9015

>NTDB_id=597974 K6T24_RS19360 WP_000811505.1 3851618..3852052(-) (nucA/comI) [Bacillus toyonensis strain UTDF19-29B]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNAYDQVLEFPKGRYPETGKHITDAIKEGHSEVCTIDRGGAGDRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=597974 K6T24_RS19360 WP_000811505.1 3851618..3852052(-) (nucA/comI) [Bacillus toyonensis strain UTDF19-29B]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTGTATGAAGTACTTGTTCC
AGAGGAAACAAGTATCAAAAAAACGAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGGGCGATATCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGACATTCAGAAGTTTGTACAATTGATCGTGGTGGTGCTGGAGATAGAAGGAAA
TTATCGTTAGCTCCATATCCATCAAAAAAAGGCTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGGGCGCATATTGAATATATAAGTCCAGCGGATAATCGCGGAGCAGGTTCTTGGGTAGGAAATAAGTTAGATAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(51-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.171

77.083

0.549