Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J64_RS03515 Genome accession   NZ_AP018775
Coordinates   688681..689295 (+) Length   204 a.a.
NCBI ID   WP_014550474.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-4 isolate 12H35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 683681..694295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J64_RS03490 (CHBNIII4_06690) - 684098..684616 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6J64_RS03495 (CHBNIII4_06700) aspS 684835..686601 (+) 1767 WP_014550472.1 aspartate--tRNA ligase -
  K6J64_RS03500 (CHBNIII4_06710) nudB 686623..687099 (+) 477 WP_005686755.1 dihydroneopterin triphosphate diphosphatase -
  K6J64_RS03505 (CHBNIII4_06720) - 687259..687999 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J64_RS03510 (CHBNIII4_06730) ruvC 688046..688618 (+) 573 WP_011961738.1 crossover junction endodeoxyribonuclease RuvC -
  K6J64_RS03515 (CHBNIII4_06740) ruvA 688681..689295 (+) 615 WP_014550474.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J64_RS03520 (CHBNIII4_06750) ruvB 689303..690310 (+) 1008 WP_005686749.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J64_RS03525 (CHBNIII4_06760) - 690362..690649 (-) 288 WP_005659998.1 DUF5339 domain-containing protein -
  K6J64_RS03530 (CHBNIII4_06770) xerD 690822..691715 (-) 894 WP_048946765.1 site-specific tyrosine recombinase XerD -
  K6J64_RS03535 (CHBNIII4_06780) - 691746..692912 (-) 1167 WP_014550475.1 3-phenylpropionate MFS transporter -
  K6J64_RS03540 (CHBNIII4_06790) proC 692912..693727 (-) 816 WP_014550476.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22517.29 Da        Isoelectric Point: 6.8881

>NTDB_id=59797 K6J64_RS03515 WP_014550474.1 688681..689295(+) (ruvA) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPVEAEKMVKRVAKPALTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=59797 K6J64_RS03515 WP_014550474.1 688681..689295(+) (ruvA) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTTAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GTGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGTAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGCATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.407

100

0.363

Multiple sequence alignment