Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K6T24_RS11995 Genome accession   NZ_CP081872
Coordinates   2368310..2368588 (+) Length   92 a.a.
NCBI ID   WP_000842220.1    Uniprot ID   -
Organism   Bacillus toyonensis strain UTDF19-29B     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2363310..2373588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T24_RS11975 (K6T24_11910) - 2364082..2364684 (+) 603 WP_000517273.1 hypothetical protein -
  K6T24_RS11980 (K6T24_11915) - 2365185..2366366 (+) 1182 WP_139823532.1 agmatine/peptidylarginine deiminase -
  K6T24_RS11985 (K6T24_11920) - 2366792..2367043 (-) 252 WP_000827557.1 response regulator transcription factor -
  K6T24_RS11990 (K6T24_11925) - 2367291..2368169 (+) 879 WP_000397971.1 helix-turn-helix domain-containing protein -
  K6T24_RS11995 (K6T24_11930) abrB 2368310..2368588 (+) 279 WP_000842220.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K6T24_RS12000 (K6T24_11935) - 2369067..2370317 (+) 1251 WP_238185975.1 hypothetical protein -
  K6T24_RS12005 (K6T24_11940) - 2370385..2371143 (+) 759 WP_002043431.1 TSUP family transporter -
  K6T24_RS12010 (K6T24_11945) - 2371396..2372055 (+) 660 WP_000682550.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10310.09 Da        Isoelectric Point: 9.6266

>NTDB_id=597968 K6T24_RS11995 WP_000842220.1 2368310..2368588(+) (abrB) [Bacillus toyonensis strain UTDF19-29B]
MKSRGSTRKADSMGRIVIPMEIRRSLGIVEKDALEMFVEEDQIILRKYQSSQACAITGDISDKNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=597968 K6T24_RS11995 WP_000842220.1 2368310..2368588(+) (abrB) [Bacillus toyonensis strain UTDF19-29B]
ATGAAATCAAGAGGGAGTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATGCGCTAGAAATGTTTGTGGAAGAGGATCAGATTATTTTGCGGAAATATCAATCTTCACAAGCTT
GTGCAATTACAGGTGATATTTCAGATAAGAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGAACAGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

52.222

97.826

0.511