Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K6T24_RS06355 Genome accession   NZ_CP081872
Coordinates   1239700..1240023 (-) Length   107 a.a.
NCBI ID   WP_000578874.1    Uniprot ID   -
Organism   Bacillus toyonensis strain UTDF19-29B     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234700..1245023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T24_RS06330 (K6T24_06315) - 1234965..1236251 (+) 1287 WP_238185872.1 D-alanyl-D-alanine carboxypeptidase family protein -
  K6T24_RS06335 (K6T24_06320) sipW 1236447..1237016 (+) 570 WP_000767788.1 signal peptidase I SipW -
  K6T24_RS06340 (K6T24_06325) - 1237081..1237668 (+) 588 WP_000172853.1 CalY family protein -
  K6T24_RS06345 (K6T24_06330) - 1237789..1238604 (+) 816 WP_238185873.1 DUF4047 domain-containing protein -
  K6T24_RS06350 (K6T24_06335) calY 1239024..1239617 (+) 594 WP_000053723.1 biofilm matrix protein CalY -
  K6T24_RS06355 (K6T24_06340) sinR 1239700..1240023 (-) 324 WP_000578874.1 helix-turn-helix domain-containing protein Regulator
  K6T24_RS06360 (K6T24_06345) - 1240103..1240237 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  K6T24_RS06365 (K6T24_06350) inhA1 1240583..1242970 (+) 2388 WP_085450010.1 M6 family metalloprotease immune inhibitor InhA1 -
  K6T24_RS06370 (K6T24_06355) - 1243128..1244495 (+) 1368 WP_000028367.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12417.27 Da        Isoelectric Point: 9.6542

>NTDB_id=597964 K6T24_RS06355 WP_000578874.1 1239700..1240023(-) (sinR) [Bacillus toyonensis strain UTDF19-29B]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETEKEARLDSEWTQLV
KDAMNSGVSKEQFREFLEFTQWKRNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=597964 K6T24_RS06355 WP_000578874.1 1239700..1240023(-) (sinR) [Bacillus toyonensis strain UTDF19-29B]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGACGAAACAGAAAAGGAAGCTCGCCTAGACTCCGAATGGACACAGCTCGTT
AAAGACGCAATGAACTCTGGTGTCTCTAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAGTGGAAGCGAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692