Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NBY19_RS24125 Genome accession   NZ_CP098203
Coordinates   4941284..4942276 (-) Length   330 a.a.
NCBI ID   WP_250844062.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0055     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4936284..4947276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY19_RS24115 (NBY19_24090) yieP 4939176..4939868 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  NBY19_RS24120 (NBY19_24095) mdtD 4939891..4941318 (+) 1428 WP_001280867.1 multidrug transporter subunit MdtD -
  NBY19_RS24125 (NBY19_24100) cytR 4941284..4942276 (-) 993 WP_250844062.1 ribose operon transcriptional repressor RbsR Regulator
  NBY19_RS24130 (NBY19_24105) rbsK 4942280..4943209 (-) 930 WP_001545694.1 ribokinase -
  NBY19_RS24135 (NBY19_24110) rbsB 4943335..4944225 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  NBY19_RS24140 (NBY19_24115) rbsC 4944250..4945215 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  NBY19_RS24145 (NBY19_24120) rbsA 4945220..4946725 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  NBY19_RS24150 (NBY19_24125) rbsD 4946733..4947152 (-) 420 WP_001296586.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36641.93 Da        Isoelectric Point: 5.2141

>NTDB_id=597963 NBY19_RS24125 WP_250844062.1 4941284..4942276(-) (cytR) [Escherichia coli strain Z0117EC0055]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITSPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=597963 NBY19_RS24125 WP_250844062.1 4941284..4942276(-) (cytR) [Escherichia coli strain Z0117EC0055]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCAGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361