Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   K6T24_RS05750 Genome accession   NZ_CP081872
Coordinates   1122775..1125375 (+) Length   866 a.a.
NCBI ID   WP_085450056.1    Uniprot ID   -
Organism   Bacillus toyonensis strain UTDF19-29B     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 1117775..1130375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T24_RS05710 (K6T24_05695) - 1118189..1118470 (+) 282 Protein_1028 hypothetical protein -
  K6T24_RS05715 (K6T24_05700) prsA 1118539..1119396 (-) 858 WP_001214219.1 peptidylprolyl isomerase PrsA -
  K6T24_RS05720 (K6T24_05705) - 1119526..1119657 (-) 132 WP_001120851.1 DUF3941 domain-containing protein -
  K6T24_RS05725 (K6T24_05710) - 1119758..1120615 (+) 858 WP_000364433.1 YitT family protein -
  K6T24_RS05730 (K6T24_05715) - 1120641..1120838 (-) 198 WP_000527396.1 DUF3813 domain-containing protein -
  K6T24_RS05735 (K6T24_05720) - 1120839..1120979 (-) 141 WP_000516816.1 hypothetical protein -
  K6T24_RS05740 (K6T24_05725) - 1121084..1121893 (-) 810 WP_000043171.1 Cof-type HAD-IIB family hydrolase -
  K6T24_RS05745 (K6T24_05730) - 1122386..1122565 (+) 180 WP_016082481.1 YjzC family protein -
  K6T24_RS05750 (K6T24_05735) clpC 1122775..1125375 (+) 2601 WP_085450056.1 ATP-dependent chaperone ClpB Regulator
  K6T24_RS05755 (K6T24_05740) - 1125412..1125594 (-) 183 WP_001211112.1 YjzD family protein -
  K6T24_RS05760 (K6T24_05745) - 1125751..1126485 (+) 735 WP_000028709.1 hypothetical protein -
  K6T24_RS05765 (K6T24_05750) - 1126515..1127387 (+) 873 WP_000486173.1 NAD(P)-dependent oxidoreductase -
  K6T24_RS05770 (K6T24_05755) comZ 1127452..1127628 (+) 177 WP_001003338.1 ComZ family protein Regulator
  K6T24_RS05775 (K6T24_05760) fabH 1127873..1128805 (+) 933 WP_001100555.1 beta-ketoacyl-ACP synthase III -
  K6T24_RS05780 (K6T24_05765) fabF 1128836..1130074 (+) 1239 WP_000412641.1 beta-ketoacyl-ACP synthase II -

Sequence


Protein


Download         Length: 866 a.a.        Molecular weight: 97640.62 Da        Isoelectric Point: 5.1950

>NTDB_id=597958 K6T24_RS05750 WP_085450056.1 1122775..1125375(+) (clpC) [Bacillus toyonensis strain UTDF19-29B]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQDVENVIKKKPSVTGSGAE
AGKLYVTSNLQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINHLFTRLHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDFGSQERLKTLQRELSDLKEVASSMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMSAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQTLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEEDGSIKEESRQLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDSAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide


Download         Length: 2601 bp        

>NTDB_id=597958 K6T24_RS05750 WP_085450056.1 1122775..1125375(+) (clpC) [Bacillus toyonensis strain UTDF19-29B]
ATGGACTTAAATCAAATGACAACGAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAGGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTGAAGCAAGATGTAGAAAATGTAATTAAAAAGAAACCTTCCGTAACGGGAAGCGGAGCAGAA
GCTGGGAAATTGTATGTAACAAGCAATCTGCAGCAACTGCTTGTAAGAGCAGGGAAAGAAGCAGAAAAACTGCAGGATGA
TTACATTTCAGTAGAACATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCGATATCAATCATTTATTTACAAGATTGCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCATTAGAAAAATATGGCCGTGATTTAGTGGCGGAAGTGAGAGCAGGGAAAATTGATCCTGTTATCGGACGAGA
TAGTGAAATTCGCCGCGTTATTCGCATTCTTTCACGTAAAACGAAAAACAACCCTGTTTTAATTGGTGAGCCAGGTGTTG
GTAAAACAGCAATTGTTGAAGGATTAGCACAGCGTATCGTGAAAAAAGATGTACCAGAAGGGTTAAAAGATAGAACAATC
TTTGCATTAGATATGAGTGCACTTGTAGCCGGAGCAAAATTCCGTGGTGAATTTGAAGAGCGCCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGCCGTATTTTATTATTCATTGATGAACTTCATACAATCGTCGGCGCTGGTAAAACAGAAG
GTGCGATGGACGCAGGAAATATGTTAAAACCGATGCTTGCTCGTGGTGAACTGCATTGTATCGGGGCAACGACATTAGAT
GAATATCGTAAATATATTGAGAAAGACCCAGCGTTAGAAAGACGTTTCCAACAAGTATTAGCAGAGGAACCGACTGTTGA
AGATACAATCTCCATTTTACGTGGTTTAAAAGAGCGTTTTGAAATTTATCACGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCTGTTTTATCAGATCGATATATTTCAGATCGCTTCTTACCGGATAAAGCAATTGACCTTGTTGACGAAGCA
TGCGCAACAATTCGTACAGAAATTGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGTATTATGCAGCTGGAAAT
TGAAGAAGCCGCTCTTGGAAAAGAGAAGGACTTTGGTAGCCAAGAACGTCTAAAAACATTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTAGCATGAGAGCGAAATGGGAGAAAGAAAAAGAAGATATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAGCGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGTAATTACGATTTAAATAAAGCAGCTGAACTTCGTCACGG
AAAAATTCCTGCAATTGAAAAAGAATTAAAAGAAGCGGAAGAAATGAGCGCACATAATAAACAAGAAAATCGTTTATTAC
GCGAGGAAGTCAGTGAAGAAGAAATTGCTGATATCGTTTCACGCTGGACTGGTATTCCTGTCGCAAAACTAGTTGAAGGT
GAACGTGAGAAATTACTACGCTTAGAGCAAATTTTATCAGAGCGTGTTATCGGACAAGAGGAAGCAGTAAGCTTAGTATC
AGATGCAGTTCTTCGTGCTCGCGCTGGTATTAAAGATCCGAACCGTCCAATTGGTTCCTTCATTTTCTTAGGCCCTACAG
GTGTTGGTAAAACTGAGCTTGCAAAAACGTTAGCGCAAACGTTATTTGATAGTGAAGAGCAAATGATTCGTATCGATATG
TCTGAGTACATGGAGAAACATGCGGTGTCACGCTTAATTGGTGCTCCTCCTGGATATGTAGGATATGAAGAGGGTGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCCGTTATTTTGTTAGATGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGGCGCATTACAGATTCACAAGGCCGTACAGTAGATTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCACTTGTTAGATGGATTAGAAGAAGATGGTTCCATTAAAGAAGAATCAAGACA
ACTTGTAATGGGACAATTAAGAGGACATTTCCGACCAGAGTTTTTAAACCGTGTCGATGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAGTTACAAGGTCGTTTAGCTGACCGTCACATTACA
GTGGAATTAACGGATTCTGCAAAAGAATTTGTTGTAGAAGCTGGCTTTGATCCGATGTACGGAGCTCGTCCATTAAAACG
ATACGTACAGCGTCAAGTGGAAACAAAATTAGCGAGAGAATTAATTGCAGGCACAATTACGGATAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTTGTTCATGTGAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

47.543

100

0.48

  clpC Lactococcus lactis subsp. cremoris KW2

46.704

82.333

0.385