Detailed information NTG0597954

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NBY19_RS23100
• Genome accession: NZ_CP098203
• Coordinates: 4728562..4729587 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain Z0117EC0055
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4723562..4734587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBY19_RS23080 (NBY19_23055)	metJ	4724747..4725064 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NBY19_RS23085 (NBY19_23060)	yiiX	4725124..4725732 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
NBY19_RS23090 (NBY19_23065)	rpmE	4725793..4726005 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NBY19_RS23095 (NBY19_23070)	priA	4726208..4728406 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
NBY19_RS23100 (NBY19_23075)	cytR	4728562..4729587 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
NBY19_RS23105 (NBY19_23080)	ftsN	4729679..4730638 (+)	960	WP_000068834.1	cell division protein FtsN	-
NBY19_RS23110 (NBY19_23085)	hslV	4730731..4731261 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NBY19_RS23115 (NBY19_23090)	hslU	4731271..4732602 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
NBY19_RS23120 (NBY19_23095)	menA	4732669..4733595 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NBY19_RS23125 (NBY19_23100)	rraA	4733688..4734173 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NBY19_RS23130 (NBY19_23105)	zapB	4734258..4734503 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=597954 NBY19_RS23100 WP_000644908.1 4728562..4729587(+) (cytR) [Escherichia coli strain Z0117EC0055]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=597954 NBY19_RS23100 WP_000644908.1 4728562..4729587(+) (cytR) [Escherichia coli strain Z0117EC0055]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625