Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   K6T24_RS00020 Genome accession   NZ_CP081872
Coordinates   3018..4145 (+) Length   375 a.a.
NCBI ID   WP_085450913.1    Uniprot ID   -
Organism   Bacillus toyonensis strain UTDF19-29B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T24_RS00005 (K6T24_00005) dnaA 1..1341 (+) 1341 WP_085450914.1 chromosomal replication initiator protein DnaA -
  K6T24_RS00010 (K6T24_00010) dnaN 1520..2665 (+) 1146 WP_001212897.1 DNA polymerase III subunit beta -
  K6T24_RS00015 (K6T24_00015) yaaA 2793..3005 (+) 213 WP_000821369.1 S4 domain-containing protein YaaA -
  K6T24_RS00020 (K6T24_00020) recF 3018..4145 (+) 1128 WP_085450913.1 DNA replication/repair protein RecF Machinery gene
  K6T24_RS00025 (K6T24_00025) gyrB 4185..6107 (+) 1923 WP_000435980.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  K6T24_RS00030 (K6T24_00030) gyrA 6196..8664 (+) 2469 WP_001282863.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43348.60 Da        Isoelectric Point: 6.5997

>NTDB_id=597946 K6T24_RS00020 WP_085450913.1 3018..4145(+) (recF) [Bacillus toyonensis strain UTDF19-29B]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFDFLHLLQEWAAPIHRGISRGLEELEIIYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGRVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=597946 K6T24_RS00020 WP_085450913.1 3018..4145(+) (recF) [Bacillus toyonensis strain UTDF19-29B]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTGAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACAAATTTGATGGAAGCTATTTATGTGTTAGCGATGGCGAAATCTCATAGAA
CCTCCAATGACCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAGTTCT
TTGTCTTTAGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTGAGTCAATA
TATTGGCGAAATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTTTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACGCAACGA
AACCACTTGCTAAAAAAAATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTATTTACACTGCAACTGATTGA
ACACGGTGCAAAAATATTGCAAAAGCGTTTTGATTTTTTACATTTACTGCAAGAATGGGCAGCCCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTATTTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACTGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGCTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAGGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTGAAAGACGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.848

98.133

0.656