Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   K6T23_RS14275 Genome accession   NZ_CP081870
Coordinates   2720128..2721171 (-) Length   347 a.a.
NCBI ID   WP_079516374.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain UTDF19-31A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2715128..2726171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T23_RS14230 (K6T23_14255) - 2715463..2716248 (+) 786 WP_148984547.1 YqhG family protein -
  K6T23_RS14235 (K6T23_14260) - 2716557..2716784 (-) 228 WP_317950150.1 YqzE family protein -
  K6T23_RS14240 (K6T23_14265) - 2716788..2717288 (-) 501 WP_238281461.1 shikimate kinase -
  K6T23_RS14245 (K6T23_14270) - 2717292..2717648 (-) 357 WP_238281463.1 hypothetical protein -
  K6T23_RS14250 (K6T23_14275) comGF 2717638..2718081 (-) 444 WP_160316477.1 competence type IV pilus minor pilin ComGF -
  K6T23_RS14255 (K6T23_14280) - 2718047..2718364 (-) 318 WP_053426596.1 hypothetical protein -
  K6T23_RS14260 (K6T23_14285) comGD 2718348..2718779 (-) 432 WP_238281465.1 competence type IV pilus minor pilin ComGD -
  K6T23_RS14265 (K6T23_14290) comGC 2718781..2719101 (-) 321 WP_273546582.1 competence type IV pilus major pilin ComGC -
  K6T23_RS14270 (K6T23_14295) comGB 2719122..2720177 (-) 1056 WP_238281467.1 competence type IV pilus assembly protein ComGB -
  K6T23_RS14275 (K6T23_14300) comGA 2720128..2721171 (-) 1044 WP_079516374.1 competence type IV pilus ATPase ComGA Machinery gene
  K6T23_RS14280 (K6T23_14305) - 2721340..2722335 (-) 996 WP_420493475.1 branched-chain amino acid ABC transporter permease -
  K6T23_RS14285 (K6T23_14310) - 2722332..2723204 (-) 873 WP_238281468.1 branched-chain amino acid ABC transporter permease -
  K6T23_RS14290 (K6T23_14315) - 2723227..2723931 (-) 705 WP_159644093.1 ABC transporter ATP-binding protein -
  K6T23_RS14295 (K6T23_14320) - 2723909..2724682 (-) 774 WP_238281470.1 ABC transporter ATP-binding protein -
  K6T23_RS14300 (K6T23_14325) - 2724744..2725946 (-) 1203 WP_238281472.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39154.63 Da        Isoelectric Point: 9.3873

>NTDB_id=597921 K6T23_RS14275 WP_079516374.1 2720128..2721171(-) (comGA) [Rossellomorea marisflavi strain UTDF19-31A]
MISEAFRSHATDVHLVPRKNDYLIQFRKLGTLVPFKTIDEDQAERLIAHLKFMSSMDIAEKRKPQSGSYTHFISRIPLAL
RVSTLPTTHLKESLVIRILPERYQIPIEHMSLYPSSAKKLVALLMHSHGLILFTGPTGSGKTTTLYSLVHHCAVSLNRNV
ITLEDPVEKAHEEMVQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDKETAEIAVRAALTGHLVLSSVHTRDAKGAIY
RLMELGIKWHDIEQTILAVSAQRLLRLKCPVCGNDCFGECLAEGKRTNRATVFEILTGKELKNVLMEAKGDKVDHRYLTL
KQLIRKGVALGYVPESEYRKWIHEEKG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=597921 K6T23_RS14275 WP_079516374.1 2720128..2721171(-) (comGA) [Rossellomorea marisflavi strain UTDF19-31A]
ATGATTTCGGAAGCATTTCGCAGTCATGCAACAGATGTCCATCTCGTCCCCCGTAAGAACGATTACCTCATTCAGTTCAG
AAAGCTCGGAACACTCGTCCCCTTCAAGACAATCGACGAAGACCAGGCCGAGCGCCTCATCGCCCATCTGAAGTTCATGT
CCTCCATGGATATCGCAGAGAAGCGAAAGCCCCAAAGCGGCTCCTACACTCATTTCATCTCACGGATCCCACTGGCACTG
CGGGTATCCACCCTTCCGACCACCCATCTCAAAGAAAGCCTCGTCATCCGGATCCTGCCCGAACGCTATCAAATCCCCAT
CGAGCATATGTCCCTCTATCCGTCATCAGCTAAAAAACTCGTCGCCCTGCTCATGCACTCCCACGGTCTTATTCTATTTA
CCGGACCGACAGGCAGCGGTAAGACGACCACCCTTTACTCCCTTGTCCACCATTGTGCCGTTTCCCTCAACCGCAACGTC
ATCACCTTAGAAGATCCTGTTGAGAAGGCCCACGAAGAAATGGTCCAAATCCAGGTGAATGAAAAGGCAGGCATCACGTA
TTCGACCGGTCTTAAAGCGATTCTCCGCCATGATCCGGATATCATCATGGTCGGGGAGATCCGGGATAAAGAAACCGCTG
AGATTGCCGTCAGGGCAGCCCTCACTGGACATCTCGTCCTCTCATCTGTCCATACGCGGGATGCGAAGGGTGCCATCTAC
CGGCTCATGGAGCTCGGGATCAAATGGCATGACATTGAACAGACCATTTTGGCGGTTTCTGCTCAAAGGCTGCTTCGATT
GAAATGTCCGGTATGCGGAAATGATTGCTTCGGGGAATGCCTCGCTGAAGGGAAGAGGACCAACCGGGCTACGGTTTTCG
AGATCCTGACGGGCAAAGAGCTGAAGAATGTGCTGATGGAAGCAAAGGGTGATAAGGTCGACCATCGATACCTGACGCTG
AAACAGCTCATCCGGAAGGGGGTGGCCCTCGGATATGTTCCGGAATCTGAGTATCGGAAATGGATACATGAAGAAAAGGG
ATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.043

100

0.55