Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K6T23_RS14040 Genome accession   NZ_CP081870
Coordinates   2677286..2678986 (-) Length   566 a.a.
NCBI ID   WP_056535471.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain UTDF19-31A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2672286..2683986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T23_RS14020 (K6T23_14045) - 2673767..2674006 (+) 240 WP_053426633.1 DUF2627 domain-containing protein -
  K6T23_RS14025 (K6T23_14050) - 2674015..2674743 (-) 729 WP_056535477.1 glycerophosphodiester phosphodiesterase -
  K6T23_RS14030 (K6T23_14055) spo0A 2674840..2675616 (-) 777 WP_048014027.1 sporulation transcription factor Spo0A -
  K6T23_RS14035 (K6T23_14060) spoIVB 2675882..2677159 (-) 1278 WP_056535472.1 SpoIVB peptidase -
  K6T23_RS14040 (K6T23_14065) recN 2677286..2678986 (-) 1701 WP_056535471.1 DNA repair protein RecN Machinery gene
  K6T23_RS14045 (K6T23_14070) ahrC 2679106..2679558 (-) 453 WP_222115393.1 transcriptional regulator AhrC/ArgR -
  K6T23_RS14050 (K6T23_14075) - 2680048..2681655 (+) 1608 WP_053426627.1 APC family permease -
  K6T23_RS14055 (K6T23_14080) - 2681725..2682564 (-) 840 WP_238281437.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63594.24 Da        Isoelectric Point: 5.0369

>NTDB_id=597920 K6T23_RS14040 WP_056535471.1 2677286..2678986(-) (recN) [Rossellomorea marisflavi strain UTDF19-31A]
MLQELSIKNFAIIDSIALSFEEGLTVLSGETGAGKSIIIDAIHLLVGGRGSSEFVRHGEKKAEIEGLFLLDDPRHPCHAK
ASEFGIDIEEGMIVLRRDISSTGKSVCRVNGKLVTIATMREIGSTLIDIHGQHEHQELMNEHLHLTLLDQFGGKDIASSL
TAYLDVFEEYQTVARQLKRLNENEQEMAHRLDLIQFQQKEIQDAELRLHEDDELQDEKLKLVNFEKLYEALQTSYDSLRG
ERKGMDWAGLAMGHLETAAEVDAQFGGTLESVSSAYYILEDAAHAIRAELDQLEFEPGRLDMIESRLNEINGLKRKYGSS
IEEVLAYGSRIEEEIETIVNKDSHVQQLQDQLRSLENDLSVEAENLTIARKKWAKKLTVSIHEQLKQLYMDKTKFEVKFL
TDGDAVNRKFKKDGWDEVEFYISTNPGEPLKPLSKVASGGELSRIMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQSIA
EKIYQVAVHSQVMCISHLPQVAAMADCHLFISKKQANGRTSTKVKRLEENEKIQEISRMISGVEITDLTLEHAKELLHLA
GSIKET

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=597920 K6T23_RS14040 WP_056535471.1 2677286..2678986(-) (recN) [Rossellomorea marisflavi strain UTDF19-31A]
TTGTTACAGGAACTTTCAATCAAAAATTTTGCCATCATCGACTCGATTGCCCTTTCATTCGAAGAAGGATTGACGGTCCT
TTCAGGGGAAACAGGTGCCGGGAAGTCCATTATCATCGATGCCATCCATCTATTGGTGGGAGGCAGGGGATCGTCAGAGT
TCGTCCGGCATGGAGAAAAAAAAGCCGAGATTGAAGGGTTATTCCTTTTGGACGATCCCCGTCATCCTTGCCATGCGAAG
GCTTCCGAATTCGGCATCGACATCGAAGAGGGCATGATTGTTCTCAGGAGAGATATTTCCAGTACGGGTAAAAGTGTTTG
CAGAGTCAACGGAAAGCTTGTGACGATTGCCACCATGCGTGAAATCGGGTCGACCCTCATTGATATCCATGGGCAGCATG
AGCATCAGGAGCTTATGAATGAGCACCTTCATCTGACGCTTCTGGATCAGTTTGGGGGGAAGGATATTGCATCATCGCTC
ACAGCCTATCTGGATGTGTTTGAAGAATATCAGACCGTAGCCAGGCAGCTTAAGCGCTTGAATGAAAATGAACAGGAGAT
GGCTCATCGCCTGGATCTTATCCAGTTCCAGCAAAAAGAAATCCAGGATGCGGAGCTTCGCCTGCATGAGGATGATGAAC
TGCAGGATGAAAAGCTGAAGCTCGTCAATTTCGAAAAGCTATATGAAGCCCTTCAGACGTCGTATGACAGCCTGCGAGGG
GAAAGAAAAGGAATGGACTGGGCGGGGCTTGCCATGGGTCATCTTGAGACAGCAGCGGAAGTGGACGCCCAGTTTGGCGG
GACGCTTGAGTCAGTATCCTCGGCCTATTACATCCTTGAGGATGCCGCACATGCGATCAGGGCGGAATTGGATCAACTGG
AATTTGAACCGGGCAGGCTCGATATGATCGAGTCCAGGCTGAATGAGATCAATGGACTGAAACGCAAGTATGGTTCATCG
ATCGAAGAGGTGCTTGCGTATGGCTCACGGATTGAAGAGGAAATTGAAACAATCGTTAACAAGGATTCACATGTTCAACA
GCTGCAAGATCAGCTGCGCTCCCTCGAAAATGATCTTTCCGTCGAGGCGGAAAATCTGACCATCGCCCGTAAGAAGTGGG
CTAAGAAGCTCACGGTCAGCATCCATGAGCAGTTGAAACAGCTGTACATGGATAAAACGAAATTCGAGGTCAAGTTCCTG
ACCGACGGAGATGCTGTGAACCGGAAGTTCAAGAAGGACGGATGGGATGAAGTCGAGTTTTATATCTCGACGAATCCTGG
AGAACCGCTGAAGCCCCTTTCGAAGGTCGCTTCTGGGGGAGAACTTTCCCGCATCATGCTCGCCCTCAAAACCATTTTCT
CTAAACATCAAGGTATCACGTCCATCATTTTCGACGAAGTGGATACAGGTGTTAGCGGAAGAGTCGCTCAATCGATTGCA
GAGAAGATCTATCAAGTGGCCGTCCATTCACAGGTGATGTGCATTTCACATCTTCCACAGGTTGCGGCGATGGCAGACTG
TCATCTGTTCATCTCGAAGAAACAAGCGAACGGGCGTACGAGCACGAAGGTGAAAAGACTTGAGGAAAATGAGAAAATTC
AGGAAATCTCACGTATGATTTCCGGCGTGGAGATCACCGACCTTACACTTGAACATGCCAAAGAGCTCCTTCATTTGGCG
GGGAGCATCAAAGAGACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.824

100

0.601