Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K6T23_RS08550 Genome accession   NZ_CP081870
Coordinates   1604909..1606732 (+) Length   607 a.a.
NCBI ID   WP_148985432.1    Uniprot ID   A0A5D4RS98
Organism   Rossellomorea marisflavi strain UTDF19-31A     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1599909..1611732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T23_RS08530 (K6T23_08520) spxA 1600589..1600984 (+) 396 WP_048004318.1 transcriptional regulator SpxA -
  K6T23_RS08535 (K6T23_08525) mecA 1601339..1602010 (+) 672 WP_053427535.1 adaptor protein MecA -
  K6T23_RS08540 (K6T23_08530) cls 1602085..1603575 (+) 1491 WP_056537807.1 cardiolipin synthase -
  K6T23_RS08545 (K6T23_08535) - 1603664..1604815 (+) 1152 WP_238284158.1 competence protein CoiA -
  K6T23_RS08550 (K6T23_08540) pepF 1604909..1606732 (+) 1824 WP_148985432.1 oligoendopeptidase F Regulator
  K6T23_RS08555 (K6T23_08545) - 1606794..1606967 (-) 174 WP_179125790.1 hypothetical protein -
  K6T23_RS08560 (K6T23_08550) - 1607251..1608117 (-) 867 WP_235563651.1 ClpXP adapter SpxH family protein -
  K6T23_RS08565 (K6T23_08555) - 1608104..1608505 (-) 402 WP_053427531.1 globin -
  K6T23_RS08570 (K6T23_08560) - 1608667..1609281 (-) 615 WP_238284159.1 lytic transglycosylase domain-containing protein -
  K6T23_RS08575 (K6T23_08565) - 1609341..1609940 (-) 600 WP_079515828.1 CYTH domain-containing protein -
  K6T23_RS08580 (K6T23_08570) - 1610072..1610443 (+) 372 WP_238284160.1 hypothetical protein -
  K6T23_RS08585 (K6T23_08575) - 1610501..1611148 (+) 648 WP_048015489.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69942.48 Da        Isoelectric Point: 4.8280

>NTDB_id=597911 K6T23_RS08550 WP_148985432.1 1604909..1606732(+) (pepF) [Rossellomorea marisflavi strain UTDF19-31A]
MSNETAVKRLPTRSEVKQELTWRLEDIFPSDEAWEKEFKEIQELSGKAGDFKGTLGNGADELYAAFAFQDEILERMGKVY
TYSHMRYDQDTTNSHYQGMDDRAKSLYTKLGSAFAYLVPEVLSIEEERIASFLEEKAELKVYAHALEEINLQRPHILTEK
EESLLAQASEVFSSSSNTFGMLNNADLEFPSIKDENGEVTEITHGRFIRFMESGDRAVRKEAFEKVYETYGKFRNTFAST
LSGAVKKDNFSAKVRNFDSARHAALSNNNIPEQVYDNLVETVNSNLHLLQRYVKLRKKVLELDEVHMYDLYTPLVKEVKM
EVGYDEAQKMILDGLKPLGEEYANVLKEGFDNRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRSAQPYTYGNYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHHIHKKAQ
EGVALTSEYLTKEYYELNKKYFGEEIMIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSHQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTTSSPVEEACKVFEEKLNEMEALLEKLQ

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=597911 K6T23_RS08550 WP_148985432.1 1604909..1606732(+) (pepF) [Rossellomorea marisflavi strain UTDF19-31A]
ATGTCTAATGAAACAGCTGTAAAACGCCTGCCGACCCGCAGTGAAGTAAAGCAGGAGCTAACGTGGAGGCTTGAAGATAT
CTTCCCGAGTGACGAAGCCTGGGAGAAAGAGTTCAAAGAGATCCAGGAGCTTTCAGGCAAGGCAGGGGATTTCAAAGGAA
CACTCGGCAACGGAGCAGATGAACTATATGCCGCTTTTGCTTTCCAGGATGAGATCCTTGAGCGGATGGGGAAGGTTTAT
ACATACTCACATATGCGCTACGACCAGGATACCACCAACTCCCATTATCAGGGGATGGACGACAGGGCGAAGAGTCTTTA
TACAAAGCTCGGCAGCGCATTTGCCTATCTGGTTCCGGAGGTTCTTTCCATCGAGGAGGAAAGGATTGCATCATTCCTTG
AAGAAAAAGCTGAACTGAAGGTTTATGCCCATGCCCTTGAAGAGATCAACCTTCAACGTCCTCATATTCTGACTGAGAAG
GAAGAGTCCCTTCTGGCGCAGGCATCAGAGGTGTTCAGTTCATCAAGCAATACATTCGGAATGCTGAATAATGCCGATCT
TGAATTTCCAAGTATCAAAGATGAAAACGGGGAAGTAACGGAAATCACCCACGGGCGATTCATCCGTTTCATGGAGAGCG
GTGATCGCGCAGTCAGGAAAGAAGCGTTTGAAAAAGTCTATGAGACGTATGGTAAGTTCCGCAATACATTCGCTTCTACA
CTGAGCGGTGCCGTGAAGAAAGATAATTTCTCAGCGAAAGTTCGGAACTTTGATTCAGCACGCCATGCGGCCCTTTCAAA
CAATAATATTCCCGAGCAGGTGTATGATAACCTGGTTGAGACCGTCAACAGCAATCTGCATCTCCTTCAGCGATATGTGA
AGCTGCGCAAAAAGGTCCTTGAGCTCGATGAAGTCCATATGTATGACTTGTACACTCCGCTTGTGAAGGAAGTCAAAATG
GAAGTCGGGTATGATGAAGCCCAGAAGATGATCCTTGACGGCCTCAAGCCTCTCGGCGAAGAGTATGCGAATGTCCTGAA
GGAAGGGTTTGATAACCGCTGGGTGGACGTTGTGGAGAACAAAGGGAAGAGGAGCGGGGCCTATTCATCGGGGGCGTATG
GGACGAATCCGTATATCCTTATGAACTGGCAGGATAATGTGAACAATCTGTTTACCCTTGCCCATGAGTTCGGCCACAGT
GTCCATAGTTATTACACAAGGAGCGCACAACCTTACACGTACGGAAATTATTCCATCTTCGTGGCGGAAGTGGCATCAAC
GTGCAACGAAGCCCTCCTCAATGACTATTTATTGAAAACGATCGACGATGAGAAGAAGCGTCTTTATTTGTTGAACCACT
ATCTCGAAGGATTCAGAGGTACGGTATTCCGCCAGACCATGTTTGCCGAGTTTGAACATCATATCCACAAAAAAGCCCAG
GAAGGCGTGGCTCTAACGTCGGAATACCTGACGAAGGAATATTATGAACTCAACAAGAAGTACTTCGGTGAGGAAATCAT
GATTGATGAGGAGATCGGACTGGAATGGGCAAGGATCCCTCACTTCTATTACAATTACTACGTCTATCAATATGCCACAG
GCTTCTCGGCTGCAACGGCCCTTAGCCATCAGATCCTTGAAGAAGGCGAGCCTGCAGTCAAACGGTATATCGAGTTCCTG
AAAGCAGGAAGCTCGGATTATCCGATTGAGGTGCTCAAAAAGGCGGGAGTCGATATGACAACGTCCTCGCCGGTTGAGGA
AGCGTGCAAGGTCTTTGAAGAAAAACTCAATGAAATGGAAGCCCTTCTTGAGAAACTCCAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4RS98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.578

97.694

0.484