Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   K6T23_RS08455 Genome accession   NZ_CP081870
Coordinates   1584453..1585418 (+) Length   321 a.a.
NCBI ID   WP_273546614.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain UTDF19-31A     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579453..1590418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T23_RS08440 (K6T23_08430) - 1582509..1582691 (-) 183 WP_053427553.1 DUF2929 family protein -
  K6T23_RS08445 (K6T23_08435) - 1582917..1583657 (+) 741 WP_056537861.1 hypothetical protein -
  K6T23_RS08450 (K6T23_08440) - 1583667..1584389 (+) 723 WP_238284153.1 hypothetical protein -
  K6T23_RS08455 (K6T23_08445) med 1584453..1585418 (+) 966 WP_273546614.1 BMP family ABC transporter substrate-binding protein Regulator
  K6T23_RS08460 (K6T23_08450) comZ 1585415..1585597 (+) 183 WP_079515816.1 ComZ family protein Regulator
  K6T23_RS08465 (K6T23_08455) - 1585966..1586898 (+) 933 WP_056537841.1 beta-ketoacyl-ACP synthase III -
  K6T23_RS08470 (K6T23_08460) fabF 1586948..1588192 (+) 1245 WP_053427547.1 beta-ketoacyl-ACP synthase II -
  K6T23_RS08475 (K6T23_08465) - 1588284..1589048 (+) 765 WP_238284154.1 DUF2268 domain-containing protein -
  K6T23_RS08480 (K6T23_08470) - 1589151..1589900 (+) 750 WP_056537836.1 YjbA family protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35136.23 Da        Isoelectric Point: 4.3545

>NTDB_id=597906 K6T23_RS08455 WP_273546614.1 1584453..1585418(+) (med) [Rossellomorea marisflavi strain UTDF19-31A]
MIMRFFHLSMILLLLGGCTAGSRSGEMDNAGLLVPETIDDGVWGTKGYQGLLGIQKEFDVKVYYKEGMNGDTSVRHALDE
FEKEDVNLVFGHGNEYSSIFNEVASEHKNMHLVSFNGDATEKNTTSLTFKGYAMGFFGGMTAASQTNTDRLGVIAAFSWQ
PEVQGFIDGARYQNGKAEVLVEYTGHWDHSEVALDRLDGLLDQDVDVVYPAGDGYNVAVIEKLKESGRYAIGYVSDQSDL
GETTVLTSTVQHADKLYELIAGKYTAGELESGNLEFDFQDGVISMGEFSPVVPAGFKTEMNQHIKAYVDTGKLPNGKEPP
L

Nucleotide


Download         Length: 966 bp        

>NTDB_id=597906 K6T23_RS08455 WP_273546614.1 1584453..1585418(+) (med) [Rossellomorea marisflavi strain UTDF19-31A]
TTGATCATGAGATTTTTTCACTTGTCGATGATCCTTTTGCTGCTGGGGGGCTGTACTGCCGGTAGCCGGTCAGGAGAGAT
GGACAATGCTGGCCTGCTGGTCCCGGAAACGATCGATGATGGCGTTTGGGGGACAAAAGGGTATCAAGGTCTTTTGGGCA
TCCAGAAAGAGTTCGATGTGAAGGTTTACTATAAAGAGGGAATGAATGGAGACACGTCGGTCCGGCATGCCCTGGATGAA
TTTGAAAAAGAGGACGTCAATCTTGTGTTCGGCCATGGGAATGAATACTCTTCCATATTCAATGAGGTGGCATCAGAGCA
TAAGAATATGCATCTGGTAAGCTTCAATGGGGACGCTACGGAGAAGAATACTACCAGCTTGACGTTCAAAGGGTACGCCA
TGGGGTTTTTCGGAGGAATGACTGCTGCTTCCCAGACAAATACGGATCGACTCGGCGTCATTGCAGCCTTTTCCTGGCAG
CCGGAAGTCCAAGGGTTCATTGATGGAGCCAGATACCAAAATGGTAAAGCCGAGGTCCTGGTCGAATATACGGGCCACTG
GGACCACTCGGAGGTTGCACTCGATAGGCTCGACGGGCTTCTCGATCAAGACGTGGACGTTGTATATCCAGCAGGGGACG
GGTATAATGTGGCTGTAATTGAAAAACTCAAGGAATCAGGTCGCTATGCCATCGGGTATGTGAGCGACCAGTCAGACCTT
GGGGAAACAACGGTGTTGACGAGTACGGTCCAGCATGCCGACAAGCTGTATGAACTGATTGCCGGGAAATATACTGCCGG
TGAACTTGAGTCTGGTAATCTTGAATTCGATTTCCAGGACGGGGTCATCTCCATGGGAGAATTCAGCCCTGTCGTCCCTG
CCGGATTCAAGACCGAGATGAACCAGCATATCAAAGCGTATGTCGATACCGGAAAACTACCCAACGGAAAGGAGCCGCCA
TTATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(29-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

50.637

97.819

0.495