Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K6T23_RS03220 Genome accession   NZ_CP081870
Coordinates   626921..627871 (+) Length   316 a.a.
NCBI ID   WP_079515375.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain UTDF19-31A     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 621921..632871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T23_RS03200 (K6T23_03195) motA 622088..622879 (+) 792 WP_056533013.1 flagellar motor stator protein MotA -
  K6T23_RS03205 (K6T23_03200) motB 622866..623657 (+) 792 WP_056533015.1 flagellar motor protein MotB -
  K6T23_RS03210 (K6T23_03205) - 623832..624008 (+) 177 WP_159645440.1 hypothetical protein -
  K6T23_RS03215 (K6T23_03210) - 624138..625529 (+) 1392 WP_056533018.1 alanine/glycine:cation symporter family protein -
  K6T23_RS03220 (K6T23_03215) ceuB 626921..627871 (+) 951 WP_079515375.1 ABC transporter permease Machinery gene
  K6T23_RS03225 (K6T23_03220) - 627864..628814 (+) 951 WP_056533021.1 iron chelate uptake ABC transporter family permease subunit -
  K6T23_RS03230 (K6T23_03225) - 628811..629572 (+) 762 WP_056533024.1 ABC transporter ATP-binding protein -
  K6T23_RS03235 (K6T23_03230) - 629601..630536 (+) 936 WP_056533026.1 siderophore ABC transporter substrate-binding protein -
  K6T23_RS03240 (K6T23_03235) - 630933..632027 (+) 1095 WP_079514774.1 carbohydrate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34642.88 Da        Isoelectric Point: 10.0592

>NTDB_id=597899 K6T23_RS03220 WP_079515375.1 626921..627871(+) (ceuB) [Rossellomorea marisflavi strain UTDF19-31A]
MKKRYLLILLILLSALSLFVGVSSISPADLLSGRTDEVEVFLVSRLPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTMDATRLGILVSMIIFVEASTMEKLLVAFAFAMAGTFLFMQILDRIKFKDAVFIPLVGLMLGNVLSSVTTFFAYKANLI
QNMSSWLQGDFSLIMKGRYELLYISVPVIILAYLFANRFTVAGMGEEFSKNLGMSYRSIVNIGLILTSLVTVTVILTVGM
IPFLGLIVPNIVSLFKGDHLQRTLPHTAIVGAIFLLVCDILGRIIIFPYEISISLMVGVIGSAIFLYMLLRRKGYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=597899 K6T23_RS03220 WP_079515375.1 626921..627871(+) (ceuB) [Rossellomorea marisflavi strain UTDF19-31A]
CTGAAAAAAAGATACTTATTGATTTTACTGATCCTCCTCTCAGCCCTTTCTTTATTTGTCGGGGTGAGCAGCATCTCGCC
GGCGGATTTACTCAGTGGAAGGACGGATGAGGTGGAGGTGTTCCTGGTCAGCAGGCTACCGAGGCTTGTGGCGATCCTAC
TGGCAGGAGCGGGGATGAGCATTGCCGGCCTCATCATGCAGAGCCTGAGCCGGAATAAGTTTGTATCTCCGACCACGGCG
GGGACGATGGATGCGACAAGGCTCGGGATCCTTGTATCGATGATCATTTTCGTCGAGGCATCCACGATGGAGAAGCTTCT
TGTGGCGTTTGCTTTTGCCATGGCGGGTACATTCCTGTTCATGCAGATCCTCGACCGGATCAAGTTCAAAGATGCTGTCT
TCATTCCCTTGGTGGGGCTGATGCTCGGGAATGTCCTGTCGTCTGTCACGACATTTTTTGCCTACAAGGCGAATCTCATC
CAGAATATGTCTTCATGGCTGCAGGGGGATTTCTCCCTCATCATGAAGGGAAGATACGAGCTTTTATACATAAGTGTACC
GGTCATCATACTTGCCTATCTCTTCGCCAATCGCTTTACGGTTGCGGGAATGGGAGAGGAGTTTTCGAAGAATCTGGGGA
TGTCCTACAGAAGTATCGTGAACATCGGGTTGATACTTACATCACTCGTGACGGTAACCGTGATTTTGACCGTGGGGATG
ATCCCCTTCCTCGGGCTCATCGTCCCGAATATCGTGTCCCTTTTCAAAGGGGATCACCTCCAGAGAACGCTGCCTCACAC
GGCCATCGTGGGAGCGATCTTTCTTCTAGTTTGCGATATCCTCGGGAGGATCATTATCTTCCCTTATGAAATCTCCATCA
GCCTGATGGTCGGGGTCATCGGAAGTGCAATCTTCCTCTACATGCTTTTAAGGAGGAAGGGATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.757

99.051

0.513