NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	K6T23_RS00630	Genome accession	NZ_CP081870
Coordinates	117857..119227 (+)	Length	456 a.a.
NCBI ID	WP_048007584.1	Uniprot ID	A0A0J5UWF3
Organism	Rossellomorea marisflavi strain UTDF19-31A
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 112857..124227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6T23_RS00610 (K6T23_00610)	-	113185..113646 (+)	462	WP_056541759.1	CtsR family transcriptional regulator	-
K6T23_RS00615 (K6T23_00615)	-	113667..114209 (+)	543	WP_053429969.1	UvrB/UvrC motif-containing protein	-
K6T23_RS00620 (K6T23_00620)	-	114206..115291 (+)	1086	WP_079513655.1	protein arginine kinase	-
K6T23_RS00625 (K6T23_00625)	clpC	115288..117732 (+)	2445	WP_056541764.1	ATP-dependent protease ATP-binding subunit ClpC	-
K6T23_RS00630 (K6T23_00630)	radA	117857..119227 (+)	1371	WP_048007584.1	DNA repair protein RadA	Machinery gene
K6T23_RS00635 (K6T23_00635)	disA	119232..120305 (+)	1074	WP_048007585.1	DNA integrity scanning diadenylate cyclase DisA	-
K6T23_RS00640 (K6T23_00640)	-	120492..121580 (+)	1089	WP_238283393.1	PIN/TRAM domain-containing protein	-
K6T23_RS00645 (K6T23_00645)	ispD	121648..122346 (+)	699	WP_056541770.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K6T23_RS00650 (K6T23_00650)	ispF	122339..122815 (+)	477	WP_238283394.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

Download Length: 456 a.a. Molecular weight: 49540.84 Da Isoelectric Point: 6.7651

                                >NTDB_id=597897 K6T23_RS00630 WP_048007584.1 117857..119227(+) (radA) [Rossellomorea marisflavi strain UTDF19-31A]

MAKKKTKFVCSSCGYESAKWMGKCPGCNEWNTMVEEVAITGKQPRGAFQHSEGPSKAEKLTSIETMQEPRVLTDSKELNR

VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQLAEQKQKVLYISGEESIKQTKLRADRLNITADDLYIYAETNLQSIHQT

IDQLSPDFVIIDSIQTIYHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLYFEG

ERHHSYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEERSQGSAGSTVVASMEGTRPVLVEIQALVTPTSFNN

PRRMATGIDHSRVSLIMAVLEKRAGMLLQQQDAYLKVAGGVKLDEPAIDLAVAASIASSFRDKASRAQDCIIGEVGLTGE

IRRVSRIEQRVQEAAKLGFQRVIIPQNNIGGWQAPGGIEVVGVSDIHQALGMILGG

Nucleotide

Download Length: 1371 bp

                                >NTDB_id=597897 K6T23_RS00630 WP_048007584.1 117857..119227(+) (radA) [Rossellomorea marisflavi strain UTDF19-31A]

TTGGCAAAAAAGAAGACAAAATTCGTATGTTCATCCTGCGGGTATGAATCAGCAAAATGGATGGGGAAATGTCCCGGGTG

TAATGAGTGGAACACGATGGTGGAAGAAGTGGCCATTACGGGGAAGCAGCCCCGTGGTGCATTCCAACACAGCGAAGGGC

CATCGAAGGCTGAAAAACTGACATCCATCGAAACGATGCAGGAGCCCCGTGTCCTTACTGATTCCAAAGAACTCAACCGG

GTACTTGGAGGAGGAGTGGTGCCGGGATCGCTTGTGTTGATAGGGGGAGACCCGGGGATAGGGAAATCCACCCTGCTGCT

GCAAGTATCTTCACAGCTTGCTGAACAAAAGCAAAAAGTCCTTTATATATCAGGTGAAGAGTCCATCAAGCAGACCAAAC

TGCGTGCGGACCGGCTGAATATCACAGCTGATGACCTATACATATATGCAGAAACCAACCTGCAGTCGATCCACCAGACC

ATCGATCAGCTTTCACCCGACTTTGTCATCATCGACTCCATTCAAACCATTTATCATCCGGAGGTCACTTCGGCACCCGG

GAGCGTATCACAGGTCCGGGAATGTACGGCTGAATTGATGCGGATCGGTAAGACGAAAGGAATTGCCATTTTCATCGTCG

GACATGTAACCAAGGAAGGATCCATCGCCGGTCCCCGTCTACTGGAGCATATGGTGGATACCGTTCTCTATTTTGAAGGG

GAGCGCCACCATTCTTACAGGATCTTGAGGGCGGTGAAAAACCGTTTCGGTTCTACGAATGAAATGGGAATCTTTGAAAT

GAAGGAGCTGGGTCTTGAAGAAGTCGCCAATCCTTCAGAGATCTTCCTCGAAGAACGTTCACAGGGATCTGCCGGGTCGA

CGGTTGTTGCATCCATGGAAGGAACAAGGCCGGTGCTTGTGGAAATTCAAGCCCTTGTCACTCCGACGAGCTTCAATAAT

CCGAGACGTATGGCAACAGGAATCGACCATAGCAGGGTCTCCCTCATCATGGCAGTGCTTGAGAAGCGGGCAGGGATGCT

CCTTCAGCAACAGGATGCCTACCTCAAGGTCGCAGGCGGAGTGAAGCTAGATGAGCCGGCTATCGATTTGGCCGTGGCGG

CGAGCATTGCTTCAAGCTTCCGGGACAAAGCTTCACGCGCACAGGATTGCATCATCGGGGAAGTGGGACTGACCGGGGAG

ATCCGGCGCGTTTCACGGATTGAGCAGAGGGTGCAGGAAGCGGCGAAGCTCGGCTTCCAGCGGGTCATCATCCCGCAGAA

CAATATCGGGGGATGGCAGGCACCGGGCGGCATCGAAGTGGTCGGTGTATCCGATATCCACCAAGCGTTGGGTATGATTT

TAGGAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0J5UWF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	73.261	100	0.739
radA	Streptococcus pneumoniae Rx1	61.72	100	0.629
radA	Streptococcus pneumoniae D39	61.72	100	0.629
radA	Streptococcus pneumoniae R6	61.72	100	0.629
radA	Streptococcus pneumoniae TIGR4	61.72	100	0.629
radA	Streptococcus mitis SK321	61.72	100	0.629
radA	Streptococcus mitis NCTC 12261	61.72	100	0.629

Detailed information NTG0597897