Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J95_RS17110 Genome accession   NZ_CP081865
Coordinates   3445234..3445830 (-) Length   198 a.a.
NCBI ID   WP_263088801.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain K5880C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3440234..3450830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J95_RS17095 (K6J95_17015) helD 3440442..3442496 (-) 2055 WP_009485779.1 DNA helicase IV -
  K6J95_RS17100 (K6J95_17020) - 3442621..3443067 (+) 447 WP_002898425.1 YccF domain-containing protein -
  K6J95_RS17105 (K6J95_17025) yccS 3443085..3445220 (+) 2136 WP_002898422.1 YccS family putative transporter -
  K6J95_RS17110 (K6J95_17030) sxy/tfoX 3445234..3445830 (-) 597 WP_263088801.1 TfoX/Sxy family DNA transformation protein Regulator
  K6J95_RS17115 (K6J95_17035) sulA 3446179..3446688 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  K6J95_RS17120 (K6J95_17040) ompA 3447041..3448111 (+) 1071 WP_002898408.1 porin OmpA -
  K6J95_RS17125 (K6J95_17045) matP 3448243..3448695 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  K6J95_RS17130 (K6J95_17050) - 3448881..3450638 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22548.17 Da        Isoelectric Point: 10.0350

>NTDB_id=597876 K6J95_RS17110 WP_263088801.1 3445234..3445830(-) (sxy/tfoX) [Klebsiella pneumoniae strain K5880C]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMMAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=597876 K6J95_RS17110 WP_263088801.1 3445234..3445830(-) (sxy/tfoX) [Klebsiella pneumoniae strain K5880C]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGATGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.282

98.485

0.505