Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NBY21_RS17635 Genome accession   NZ_CP098197
Coordinates   3686151..3686756 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain Z0117EC0062     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3681151..3691756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY21_RS17615 (NBY21_17615) aes 3681292..3682251 (+) 960 WP_000764314.1 acetyl esterase -
  NBY21_RS17620 (NBY21_17620) hemH 3682248..3683210 (-) 963 WP_001250117.1 ferrochelatase -
  NBY21_RS17625 (NBY21_17625) adk 3683342..3683986 (-) 645 WP_001220233.1 adenylate kinase -
  NBY21_RS17630 (NBY21_17630) htpG 3684167..3686041 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NBY21_RS17635 (NBY21_17635) recR 3686151..3686756 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NBY21_RS17640 (NBY21_17640) ybaB 3686756..3687085 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NBY21_RS17645 (NBY21_17645) dnaX 3687138..3689069 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NBY21_RS17650 (NBY21_17650) apt 3689198..3689749 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NBY21_RS17655 (NBY21_17655) ybaN 3689902..3690279 (-) 378 WP_001188905.1 DUF454 family protein -
  NBY21_RS17660 (NBY21_17660) priC 3690349..3690876 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  NBY21_RS17665 (NBY21_17665) rsmS 3690890..3691054 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=597772 NBY21_RS17635 WP_001195025.1 3686151..3686756(-) (recR) [Escherichia coli strain Z0117EC0062]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=597772 NBY21_RS17635 WP_001195025.1 3686151..3686756(-) (recR) [Escherichia coli strain Z0117EC0062]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443