Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K6K15_RS11085 Genome accession   NZ_CP081851
Coordinates   2286968..2288332 (-) Length   454 a.a.
NCBI ID   WP_305014926.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain XJ-003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2281968..2293332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K15_RS11065 (K6K15_11005) - 2282259..2283530 (-) 1272 WP_305014922.1 MucBP domain-containing protein -
  K6K15_RS11070 (K6K15_11010) - 2283847..2284623 (-) 777 WP_305014923.1 ABC transporter permease -
  K6K15_RS11075 (K6K15_11015) - 2284641..2285528 (-) 888 WP_305014924.1 ABC transporter ATP-binding protein -
  K6K15_RS11080 (K6K15_11020) - 2285831..2286946 (-) 1116 WP_305014925.1 PIN/TRAM domain-containing protein -
  K6K15_RS11085 (K6K15_11025) radA 2286968..2288332 (-) 1365 WP_305014926.1 DNA repair protein RadA Machinery gene
  K6K15_RS11090 (K6K15_11030) - 2288349..2288891 (-) 543 WP_003567256.1 dUTP diphosphatase -
  K6K15_RS11095 (K6K15_11035) - 2289112..2289402 (+) 291 WP_003567258.1 GNAT family N-acetyltransferase -
  K6K15_RS11100 (K6K15_11040) - 2289519..2289896 (-) 378 WP_003567260.1 DUF805 domain-containing protein -
  K6K15_RS11105 (K6K15_11045) - 2290138..2291457 (+) 1320 WP_003605926.1 C1 family peptidase -
  K6K15_RS11110 (K6K15_11050) - 2291657..2293003 (+) 1347 WP_305014927.1 aminopeptidase C -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49117.42 Da        Isoelectric Point: 7.1396

>NTDB_id=597759 K6K15_RS11085 WP_305014926.1 2286968..2288332(-) (radA) [Lacticaseibacillus paracasei strain XJ-003]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKVKPTRMNDVTITKETRVKTGLDELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLADTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVI
NQMQPDYVVIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISSTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEV
RRVNRIEERVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=597759 K6K15_RS11085 WP_305014926.1 2286968..2288332(-) (radA) [Lacticaseibacillus paracasei strain XJ-003]
ATGGCGAAAGCAAAAACACAATATGTTTGCCAAAACTGTGGCTATATTTCAGCCACTTATCTAGGCCGGTGTCCAAATTG
CGGCGGCTGGAACACCTTAGTGGAAGAAACCGTCAGTTCAAGCAAGTCTGTGCCGCGACAAACAGCAGCCGGCAGTAAGG
TAAAGCCGACGCGGATGAACGATGTGACGATCACCAAAGAAACGCGCGTCAAGACTGGCTTAGATGAACTGAACCGGGTG
CTTGGCGGCGGAGTGGTGCCAGGGTCACTGGTGCTGATCGGCGGGGATCCGGGGATTGGTAAATCAACCTTACTACTGCA
GGTGTCAGGTCAATTGGCCGATACTGGCGGAACTGTTTTGTATGTCTCTGGTGAAGAAAGTGCCAGTCAGATCAAAATGC
GGGCTGGCCGGCTTGGCGTGGCAAATTCGGGGATGTACTTGTATCCCGAAACCGACATGCCGAGTATTGAAGACGTCATC
AACCAAATGCAGCCGGATTACGTTGTGATCGACTCCGTTCAAACTATGAATGTGCCAGAAATGAATTCAGCGGTCGGTTC
TGTGGCACAGATTCGCGAAGTGACGGCAGAACTGATGCGCATTGCCAAGTCCAAAGGCGTGACCATTTTCATCGTTGGCC
ATGTCACTAAGGAAGGGGCGATTGCCGGGCCGAAGATTCTTGAGCATATGGTCGACACGGTGCTCTATTTTGAAGGCGAC
ATGCACCACACGTATCGAATCTTAAGATCCGTCAAAAATCGATTTGGATCGACCAATGAAATCGGCATTTTTGAAATGCA
TCAAGACGGGTTACAGGAAGTCGCCAATCCCTCGGAAATCTTCTTGGAAGAACGCTTGGCGGGGGCAACCGGTTCTGCGG
TGGTTGTTTCGATGGAAGGCACCCGACCAATCTTAGTCGAGATTCAAGCCTTGATCAGTTCAACGATGTATGGCAATGCT
AAACGGACGAGCAGTGGGTTGGATCACAATCGAGTGAGCTTGATCATGGCCGTTCTTGAGAAGCGGGCTAACTTGATGTT
GCAAAATCAGGACGCCTATCTCAAGGCAACAGGCGGTGTGAAACTCGATGAGCCGGCGATTGACCTCGCCATGGCTGTGG
CAATTGCGTCATCTTATCGAGATAAGGAGATTTCACCGACAGATTGTTTTGTCGGTGAAATCGGATTGACGGGGGAAGTG
CGCCGCGTCAATCGGATCGAAGAACGTGTCAAAGAGGCGGCCAAATTGGGTTTCAAACGGATTTTTGTACCACGTAACAA
CTTGCAAGGCTGGCATGCGCCAAAAGATATTCAAGTCATTGGTGTTACAAGCATTGCCGAAGCGCTGCATAAGGTCTTTA
ATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

67.991

99.78

0.678
  radA Streptococcus pneumoniae Rx1

67.991

99.78

0.678
  radA Streptococcus pneumoniae D39

67.991

99.78

0.678
  radA Streptococcus pneumoniae R6

67.991

99.78

0.678
  radA Streptococcus pneumoniae TIGR4

67.991

99.78

0.678
  radA Streptococcus mitis SK321

67.77

99.78

0.676
  radA Bacillus subtilis subsp. subtilis str. 168

64.537

100

0.645