Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   K5P74_RS13245 Genome accession   NZ_CP081846
Coordinates   2664632..2666398 (-) Length   588 a.a.
NCBI ID   WP_222226097.1    Uniprot ID   A0AAW8T6Q3
Organism   Enterococcus raffinosus strain CX012922     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2659632..2671398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P74_RS13240 (K5P74_13240) rcrQ 2662855..2664639 (-) 1785 WP_222226096.1 ABC transporter ATP-binding protein Regulator
  K5P74_RS13245 (K5P74_13245) rcrP 2664632..2666398 (-) 1767 WP_222226097.1 ABC transporter ATP-binding protein Regulator
  K5P74_RS13250 (K5P74_13250) - 2666500..2666928 (-) 429 WP_028020634.1 MarR family winged helix-turn-helix transcriptional regulator -
  K5P74_RS13255 (K5P74_13255) - 2666988..2667323 (-) 336 WP_010745126.1 hypothetical protein -
  K5P74_RS13260 (K5P74_13260) - 2667468..2668847 (-) 1380 WP_010745125.1 MATE family efflux transporter -
  K5P74_RS13265 (K5P74_13265) - 2668851..2669285 (-) 435 WP_010745124.1 MarR family winged helix-turn-helix transcriptional regulator -
  K5P74_RS13270 (K5P74_13270) - 2669432..2670718 (-) 1287 WP_222226098.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65127.26 Da        Isoelectric Point: 5.2570

>NTDB_id=597728 K5P74_RS13245 WP_222226097.1 2664632..2666398(-) (rcrP) [Enterococcus raffinosus strain CX012922]
MIQLIKRTNAKERLLVLASVLFIVGQVWMDLKVPDYMSQITTLLQTPNTAISEILKPGGWMILLSLMSFVFSSIVGLFAA
KLAASLTCRLRQEMFGQVLDYSTYEIQQFSIPSLTTRTTNDLTQIQQVVAMGLQVMIKGPITAVWAVLKIAGKNWQWTTT
TGVAVLILLIMLSVVLTLVQPRFAKVQQLTDKVNSITRENLTGLRVVRAYNAEDYQEEKFEKANQDLTATNLFAGRVMAL
LSPGMSLISGGLTLAVYWIGAYMIQQAQGGLKLSLFSDMIVFSSYAMQVVMSFVLMSMIFMILPRATVSARRINEVLTKE
SSVEFPTEGEKTQPEIKGTVEFDHVSFSYPDASEPVIHDISFKADQGDTVAFIGSTGSGKSTILNLIPRFYETTEGNISI
DEQPINTYSHVNLNDIVGYIPQKPILFSGTIQSNLDFGTSGNQPLNEEKMQEALSIAQASEFVNEKEGKLKSPVAQNGSN
FSGGQKQRLAIARVIARQPEILLFDDSFSALDYKTDKKLRQVLKEKLADTTKLIVAQRISTIMDADQILVLDEGRIVGQG
THDELLTTNSVYQEIAYSQLSKEELVNG

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=597728 K5P74_RS13245 WP_222226097.1 2664632..2666398(-) (rcrP) [Enterococcus raffinosus strain CX012922]
ATGATACAACTAATAAAACGAACCAACGCAAAAGAACGATTGCTGGTATTAGCCAGTGTACTATTTATCGTCGGACAAGT
CTGGATGGATTTGAAGGTCCCGGATTATATGTCGCAAATCACCACCTTATTGCAAACGCCTAACACCGCCATCAGTGAAA
TTTTGAAACCGGGCGGTTGGATGATTTTACTTTCTCTAATGAGCTTTGTTTTTTCTTCTATTGTCGGTTTATTCGCCGCG
AAGCTAGCCGCGAGCTTAACTTGCCGCCTACGTCAAGAGATGTTTGGGCAAGTACTGGATTATTCCACGTATGAGATTCA
GCAATTCTCGATCCCCAGTTTAACGACTCGGACAACCAATGATTTAACGCAAATTCAACAGGTAGTCGCGATGGGGCTGC
AAGTAATGATCAAAGGACCTATCACGGCGGTCTGGGCGGTATTGAAAATTGCCGGAAAAAATTGGCAGTGGACCACTACG
ACAGGGGTTGCTGTTTTGATCCTATTGATTATGCTATCGGTCGTTTTGACACTAGTGCAGCCGCGCTTTGCAAAAGTGCA
GCAATTAACCGATAAAGTTAACAGTATTACACGGGAAAATCTAACGGGTCTGCGAGTGGTCCGAGCATATAACGCAGAAG
ACTATCAAGAAGAGAAATTCGAGAAGGCCAATCAAGATCTCACAGCAACGAATTTATTCGCGGGTCGCGTAATGGCATTG
CTGAGTCCGGGAATGAGCCTGATTTCAGGCGGACTGACACTAGCGGTCTATTGGATCGGTGCTTACATGATTCAACAAGC
GCAAGGGGGACTAAAGCTTTCCTTGTTCAGTGATATGATCGTCTTTTCTTCTTATGCGATGCAGGTAGTAATGAGCTTTG
TTTTAATGTCGATGATTTTTATGATCTTACCTCGGGCGACCGTATCCGCTAGACGGATCAACGAAGTTTTAACGAAAGAA
TCCTCCGTTGAATTTCCAACGGAAGGCGAGAAAACACAACCGGAGATCAAAGGAACCGTAGAATTCGATCATGTATCATT
CAGCTATCCGGATGCTTCTGAACCTGTGATTCATGACATCAGCTTTAAGGCCGATCAGGGGGATACAGTTGCCTTTATCG
GTTCGACCGGCAGCGGAAAAAGTACAATCCTGAATTTGATTCCTCGCTTTTATGAAACAACCGAAGGAAATATTTCAATT
GATGAACAGCCGATCAATACGTATAGTCACGTGAATTTAAATGATATTGTCGGCTACATTCCCCAAAAGCCAATTTTATT
TAGCGGAACGATCCAGTCGAATCTTGATTTCGGAACCAGTGGTAATCAGCCGCTGAATGAAGAAAAAATGCAGGAAGCCT
TGTCCATTGCACAGGCTAGTGAATTTGTGAATGAAAAAGAGGGCAAGCTGAAGAGTCCGGTCGCTCAAAACGGAAGCAAT
TTCTCCGGTGGACAGAAGCAGCGTCTAGCAATTGCTCGTGTGATCGCAAGACAGCCAGAAATTCTATTATTCGATGATTC
CTTTTCTGCGCTAGATTACAAAACGGATAAAAAATTACGACAGGTACTAAAAGAAAAATTAGCTGACACGACAAAACTGA
TTGTTGCTCAACGAATCAGTACGATCATGGATGCGGATCAGATCCTTGTTTTGGATGAAGGACGAATCGTCGGACAAGGA
ACCCACGACGAATTATTGACGACCAACTCCGTCTATCAAGAGATTGCGTATTCACAGCTGTCGAAGGAGGAATTAGTTAA
TGGATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

60

100

0.612